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NC_071134.1__YP_010684057.1__PQZ61_gp60__00060
Bact-VirNC_071134.1__YP_010684057.1__PQZ61_gp60__00060
Identity
- Accession:
- NC_071134 ↗
- Kingdom:
- phage
Quality
92.6
mean pLDDT
Taxonomy
TaxID: 2894801
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-40
Domain cluster:
representative
CATH (34)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6j7xA01 | 1.25.40.120 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Protein prenylyltransferase | 0.83 | 70.0 | 4.15e-01 | 100.0% | 13.1% |
| 1lrzA03 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.83 | 70.0 | 5.94e-01 | 100.0% | 58.1% |
| 3fxdB00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.82 | 69.0 | 6.03e-01 | 100.0% | 62.1% |
| 4g1tA02 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.81 | 68.0 | 5.84e-01 | 100.0% | 59.0% |
| 2au5A00 | 1.20.120.590 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › EF2947-like | 0.81 | 67.0 | 4.65e-01 | 100.0% | 28.7% |
| 1go3F02 | 6.10.140.10 | Special › Helix non-globular › Helix Hairpins › | 0.80 | 67.0 | 6.24e-01 | 97.2% | 74.5% |
| 2kwhA00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.80 | 66.0 | 5.87e-01 | 100.0% | 64.3% |
| 3u4qA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.80 | 61.0 | 3.74e-01 | 94.4% | 14.0% |
| 4qjfB01 | 6.10.140.10 | Special › Helix non-globular › Helix Hairpins › | 0.79 | 64.0 | 5.71e-01 | 94.4% | 75.9% |
| 2rp4A00 | 6.10.280.60 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Transcription factor p53, C-terminal domain | 0.78 | 64.0 | 5.30e-01 | 100.0% | 52.1% |
| 4od8D00 | 6.10.140.1880 | Special › Helix non-globular › Helix Hairpins › | 0.78 | 62.0 | 5.66e-01 | 100.0% | 66.7% |
| 2hepA00 | 1.10.287.540 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.77 | 62.0 | 6.03e-01 | 100.0% | 88.1% |
| 2ic6A00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.76 | 60.0 | 5.02e-01 | 100.0% | 49.3% |
| 3icxA01 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.76 | 62.0 | 5.04e-01 | 100.0% | 48.0% |
| 2x1lB02 | 2.170.220.10 | Mainly Beta › Beta Complex › Methionyl-trna Synthetase; domain 2 › | 0.73 | 62.0 | 4.89e-01 | 97.2% | 46.1% |
| 5c8aA01 | 1.10.1240.10 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain | 0.72 | 60.0 | 4.81e-01 | 100.0% | 48.7% |
| 3cwzB01 | 1.20.58.900 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › RUN domain | 0.72 | 58.0 | 3.96e-01 | 100.0% | 25.3% |
| 5lb3B02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.72 | 52.0 | 3.15e-01 | 77.8% | 47.8% |
| 1nt2B02 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.71 | 54.0 | 4.73e-01 | 100.0% | 53.7% |
| 4iggA01 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.71 | 57.0 | 4.88e-01 | 100.0% | 59.7% |
| 2khvA01 | 1.10.150.130 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain | 0.68 | 52.0 | 3.90e-01 | 83.3% | 90.6% |
| 1j1jA02 | 1.20.58.200 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 | 0.67 | 54.0 | 4.26e-01 | 100.0% | 43.5% |
| 2yqyA00 | 1.20.120.450 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain | 0.67 | 55.0 | 3.88e-01 | 100.0% | 57.1% |
| 5jrcA00 | 1.20.58.2140 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.65 | 56.0 | 3.59e-01 | 100.0% | 30.1% |
| 2elcA01 | 1.20.970.10 | Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C | 0.63 | 50.0 | 4.19e-01 | 94.4% | 62.7% |
| 2qgsB01 | 1.10.472.50 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › HD-domain/PDEase-like | 0.62 | 51.0 | 3.85e-01 | 94.4% | 39.8% |
| 2yf4F00 | 1.10.3420.10 | Mainly Alpha › Orthogonal Bundle › putative ntp pyrophosphohydrolase like fold › putative ntp pyrophosphohydrolase like domain | 0.61 | 48.0 | 3.38e-01 | 100.0% | 26.6% |
| 1vquA01 | 1.20.970.10 | Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C | 0.59 | 47.0 | 4.04e-01 | 100.0% | 56.7% |
| 3cxbA03 | 1.10.1740.30 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › Secreted effector protein SifA helical domain | 0.58 | 47.0 | 3.61e-01 | 88.9% | 43.2% |
| 4jylA02 | 1.10.12.10 | Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 | 0.58 | 45.0 | 4.25e-01 | 94.4% | 81.6% |
| 3k2nA00 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.58 | 47.0 | 3.04e-01 | 91.7% | 88.1% |
| 4jcsA02 | 1.10.12.10 | Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 | 0.57 | 44.0 | 3.95e-01 | 100.0% | 71.0% |
| 3q18A02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.56 | 43.0 | 3.29e-01 | 100.0% | 69.8% |
| 4fzwA02 | 1.10.12.10 | Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 | 0.56 | 46.0 | 4.03e-01 | 97.2% | 74.1% |
ECOD (22)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3650655 | 109.4.1.150 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Ufd2P_core | 0.96 | 86.0 | 4.54e-01 | 100.0% | 4.0% |
| 3175706 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.92 | 80.0 | 4.82e-01 | 97.2% | 16.3% |
| 5040510 | 304.48.1.3 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DNA_pol_B | 0.91 | 80.0 | 4.76e-01 | 100.0% | 14.7% |
| 4974991 | 131.1.1.10 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD_3 | 0.89 | 77.0 | 4.73e-01 | 100.0% | 18.0% |
| 3484950 | 605.8.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › BAS1536-like › BAS1536-like | 0.88 | 77.0 | 7.20e-01 | 100.0% | 80.0% |
| 3963155 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.87 | 75.0 | 5.89e-01 | 100.0% | 48.0% |
| 3975852 | 192.8.1.466 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › Caudo_TAP | 0.86 | 74.0 | 6.14e-01 | 100.0% | 55.4% |
| 4009505 | 7079.1.1.1 ↗ | a+b complex topology › Phage tail fiber assembly protein › Phage tail fiber assembly protein › Phage tail fiber assembly protein › Caudo_TAP | 0.85 | 73.0 | 5.92e-01 | 100.0% | 51.4% |
| 4007897 | 3809.1.1.2 ↗ | alpha bundles › Uncharacterized protein CV0426 › Uncharacterized protein CV0426 › Uncharacterized protein CV0426 › Caudo_TAP | 0.85 | 73.0 | 5.91e-01 | 100.0% | 51.4% |
| 3667486 | 633.7.1.0 ↗ | alpha bundles › Bromodomain-like › Bacillus cereus metalloprotein-like › Bacillus cereus metalloprotein-like | 0.84 | 71.0 | 4.48e-01 | 100.0% | 19.5% |
| 5072337 | 5073.1.1.11 ↗ | alpha bundles › Calcium ATPase transmembrane domain-related › Calcium ATPase transmembrane domain-related › Calcium ATPase transmembrane domain M › Cation_ATPase_C | 0.84 | 71.0 | 3.97e-01 | 100.0% | 7.7% |
| 3582042 | 109.7.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Cytochrome c oxidase subunit E › Cytochrome c oxidase subunit E | 0.83 | 70.0 | 5.40e-01 | 97.2% | 43.8% |
| 3985321 | 3579.1.1.29 ↗ | extended segments › NADH-quinone oxidoreductase subunit J › NADH-quinone oxidoreductase subunit J › NADH-quinone oxidoreductase subunit J › ThrE_2 | 0.82 | 66.0 | 4.50e-01 | 100.0% | 24.8% |
| 5006188 | 605.1.1.1 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA | 0.82 | 67.0 | 5.81e-01 | 100.0% | 60.0% |
| 5061885 | 298.2.1.0 ↗ | a+b two layers › FwdE/GAPDH domain-like › FwdE-like › FwdE-like | 0.82 | 68.0 | 4.24e-01 | 100.0% | 18.1% |
| 3603861 | 102.1.1.11 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › RNA_pol_Rpb4 | 0.81 | 69.0 | 4.88e-01 | 97.2% | 31.8% |
| 2476070 | 616.1.1.3 ↗ | alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › Flu_NS1 | 0.78 | 63.0 | 6.30e-01 | 100.0% | 94.7% |
| 3927737 | 632.8.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 › alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 | 0.74 | 62.0 | 4.69e-01 | 100.0% | 63.2% |
| 3600869 | 3567.1.1.0 ↗ | a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer | 0.74 | 64.0 | 4.49e-01 | 100.0% | 66.1% |
| 3721864 | 616.1.1.0 ↗ | alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain | 0.74 | 61.0 | 5.20e-01 | 100.0% | 55.4% |
| 3613914 | 3922.1.1.0 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 | 0.71 | 56.0 | 4.67e-01 | 100.0% | 48.0% |
| 3283574 | 150.8.1.1 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › PPE › PPE › PPE | 0.64 | 49.0 | 3.22e-01 | 100.0% | 17.6% |