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NC_071136.1__YP_010684180.1__PQZ63_gp37__00037

Bact-Vir

NC_071136.1__YP_010684180.1__PQZ63_gp37__00037

Identity

Accession:
NC_071136 ↗
Kingdom:
phage

Quality

78.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-78
PDB
Domain cluster: representative
CATH (51)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3nctA00 3.40.50.11880 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Plasmid SOS inhibition protein 0.77 53.0 4.38e-01 75.6% 40.9%
3icaB00 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.73 50.0 3.62e-01 73.1% 26.7%
3s8zA02 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.72 45.0 2.97e-01 76.9% 15.5%
1npeA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.71 44.0 3.05e-01 75.6% 18.6%
1k32A01 2.120.10.60 Mainly Beta › 6 Propeller › Neuraminidase › Tricorn protease N-terminal domain 0.66 46.0 3.18e-01 76.9% 21.0%
4ikcA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.66 44.0 3.03e-01 100.0% 19.7%
3cqyB01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.64 45.0 3.45e-01 74.4% 48.4%
4p78C00 3.30.920.30 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Hypothetical protein. 0.63 38.0 4.02e-01 71.8% 68.2%
1zc0A00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.63 42.0 2.88e-01 100.0% 18.9%
3lhoA01 3.10.180.50 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 0.63 44.0 3.09e-01 75.6% 23.8%
3oa4A01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.62 38.0 3.20e-01 73.1% 35.3%
2w38A01 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.62 43.0 2.85e-01 71.8% 25.1%
3qwmA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 54.0 4.66e-01 100.0% 68.5%
3rmuA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.61 39.0 3.35e-01 70.5% 38.1%
1ylxA00 3.30.70.1480 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GK1464-like 0.61 44.0 4.15e-01 80.8% 61.6%
2aehA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 54.0 4.82e-01 100.0% 86.5%
2y3vD00 2.170.210.20 Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › Spindle assembly abnormal protein 6, N-terminal domain 0.61 47.0 3.81e-01 84.6% 54.5%
4mdaA00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.61 44.0 3.32e-01 78.2% 46.5%
4tyzA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 51.0 4.56e-01 97.4% 81.7%
4q3kB00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.58 51.0 3.67e-01 100.0% 38.0%
3dcxA00 2.30.29.50 Mainly Beta › Roll › PH-domain like › Bacterial Pleckstrin homology domain 0.58 49.0 4.36e-01 96.2% 76.1%
1ebdA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.58 33.0 2.89e-01 96.2% 36.4%
2zshA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.58 51.0 3.39e-01 100.0% 32.0%
4mjgA00 3.30.2030.30 Alpha Beta › 2-Layer Sandwich › TBP-like › 0.58 48.0 3.88e-01 100.0% 78.5%
3g8yA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.58 49.0 3.19e-01 97.4% 37.6%
1mdaH00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.58 48.0 3.04e-01 89.7% 93.5%
5umsA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 49.0 4.55e-01 96.2% 82.4%
1e8oD00 3.30.720.10 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 0.58 46.0 4.64e-01 100.0% 92.1%
1plqA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.57 51.0 3.56e-01 100.0% 46.9%
2nugB02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.57 40.0 4.16e-01 89.7% 81.7%
4j0xA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 41.0 2.64e-01 76.9% 27.7%
1z87A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 49.0 4.61e-01 100.0% 97.0%
1di2A00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.56 39.0 4.11e-01 85.9% 82.6%
2mdrA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.56 41.0 3.86e-01 89.7% 63.8%
1uhzA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.55 41.0 3.95e-01 88.5% 69.7%
6bu2A00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.55 37.0 3.09e-01 71.8% 37.3%
2l2mA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.54 38.0 3.93e-01 80.8% 81.4%
3nuhB03 3.10.20.690 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.54 34.0 3.23e-01 85.9% 55.1%
1sxjH01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.54 46.0 4.03e-01 97.4% 89.5%
1oxxK02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 30.0 3.58e-01 85.9% 91.1%
2ojhA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.54 47.0 3.26e-01 100.0% 93.9%
1lf6A01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.54 48.0 3.28e-01 100.0% 56.4%
5i47B03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.53 36.0 3.38e-01 70.5% 83.2%
1euvA02 3.30.310.130 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Ubiquitin-related 0.52 47.0 4.26e-01 100.0% 74.3%
2jh1A01 3.90.640.70 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › 0.52 40.0 3.60e-01 82.1% 88.0%
3b77A01 2.30.29.50 Mainly Beta › Roll › PH-domain like › Bacterial Pleckstrin homology domain 0.52 35.0 3.33e-01 71.8% 95.0%
3k44B00 3.30.2450.30 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.51 44.0 3.72e-01 100.0% 95.0%
2xr1A03 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.51 37.0 2.61e-01 76.9% 63.8%
2o7rA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.51 43.0 3.01e-01 100.0% 33.2%
5jowA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.50 43.0 3.27e-01 100.0% 50.0%
2durB01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.50 42.0 3.15e-01 100.0% 53.3%
ECOD (66)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5075465 4325.1.1.0 mixed a+b and a/b › YegP-like › YegP-like › YegP-like 0.77 51.0 5.67e-01 75.6% 88.3%
5011728 4210.1.1.0 a+b two layers › WGR domain › WGR domain › WGR domain 0.74 47.0 4.42e-01 70.5% 53.7%
4600425 2484.1.1.40 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvX 0.71 47.0 3.75e-01 71.8% 34.2%
3285858 2004.1.1.88 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › cobW 0.70 51.0 3.60e-01 78.2% 25.0%
3425789 5.1.3.68 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF1618 0.68 43.0 2.85e-01 75.6% 15.6%
3621390 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.65 47.0 3.19e-01 76.9% 82.5%
3612383 2484.1.1.18 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.65 56.0 3.62e-01 100.0% 21.3%
3705941 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.65 45.0 4.50e-01 76.9% 71.2%
4023893 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.64 53.0 4.78e-01 92.3% 70.0%
3933100 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.64 43.0 4.47e-01 84.6% 77.1%
4156379 2484.1.1.41 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › AnmK 0.64 46.0 3.60e-01 75.6% 54.5%
4968414 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.63 52.0 4.03e-01 97.4% 39.5%
3565552 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.62 55.0 4.74e-01 100.0% 75.2%
3269042 220.1.1.74 beta barrels › PH domain-like › PH domain-like › PH domain-like › PIG-H 0.62 55.0 4.85e-01 100.0% 87.0%
3283795 220.1.1.17 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_1 0.62 54.0 4.77e-01 97.4% 72.2%
3175837 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.62 43.0 3.48e-01 73.1% 39.3%
4011588 4325.1.1.0 mixed a+b and a/b › YegP-like › YegP-like › YegP-like 0.62 44.0 4.52e-01 76.9% 84.0%
3175519 220.1.1.74 beta barrels › PH domain-like › PH domain-like › PH domain-like › PIG-H 0.61 52.0 4.44e-01 97.4% 81.5%
3591998 220.1.1.11 beta barrels › PH domain-like › PH domain-like › PH domain-like › Rpn13_ADRM1_Pru 0.60 53.0 4.79e-01 100.0% 96.4%
3873956 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.60 51.0 4.49e-01 96.2% 77.5%
3290300 220.1.1.76 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.60 54.0 5.27e-01 100.0% 95.3%
3801624 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.60 42.0 3.92e-01 84.6% 58.0%
3592742 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.59 44.0 4.23e-01 80.8% 70.0%
3204334 375.1.1.19 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD 0.59 37.0 4.38e-01 93.6% 100.0%
3271779 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 52.0 4.25e-01 100.0% 68.3%
3363058 5.1.8.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › putative conserved lipoprotein NT01CX_1156 0.58 41.0 2.96e-01 73.1% 41.3%
135359 220.1.1.17 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_1 0.58 51.0 4.36e-01 97.4% 66.4%
3436093 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.58 38.0 3.91e-01 82.1% 70.7%
3907223 5.1.3.179 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Sortilin-Vps10 0.57 40.0 2.85e-01 73.1% 33.1%
5039031 220.1.1.76 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.57 48.0 4.39e-01 97.4% 97.3%
3916526 719.1.1.1 beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain › XRCC4 0.57 42.0 3.59e-01 79.5% 99.2%
3386501 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 46.0 4.76e-01 91.0% 100.0%
5039029 220.1.1.76 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.56 49.0 4.73e-01 100.0% 87.8%
3408974 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.56 40.0 3.86e-01 89.7% 63.2%
4444614 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.56 40.0 4.01e-01 75.6% 87.5%
3465399 331.3.1.43 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PDF2_C 0.56 38.0 2.77e-01 70.5% 77.5%
3733972 9.4.1.4 beta barrels › Lipocalins/Streptavidin › D-aminopeptidase, middle and C-terminal domains › D-aminopeptidase, middle and C-terminal domains › PF26335 0.56 42.0 3.70e-01 84.6% 82.3%
4386515 330.1.1.30 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › PF27148 0.56 41.0 4.48e-01 91.0% 93.8%
4106397 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.56 39.0 4.04e-01 75.6% 80.0%
4027675 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.55 40.0 3.27e-01 76.9% 44.3%
3535709 206.1.1.20 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.55 40.0 2.71e-01 78.2% 37.4%
4953759 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.55 34.0 3.70e-01 83.3% 80.0%
3516145 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.55 39.0 3.93e-01 89.7% 75.0%
3588355 330.2.1.1 a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) › Ribosomal_S30AE 0.54 37.0 3.45e-01 70.5% 60.0%
3685780 2003.1.2.15 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.54 42.0 2.72e-01 84.6% 46.2%
3497120 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.54 40.0 3.82e-01 89.7% 65.3%
4956750 2003.1.2.24 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.54 42.0 2.75e-01 84.6% 62.4%
3344044 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.54 38.0 3.70e-01 75.6% 74.4%
3655368 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.54 38.0 3.86e-01 74.4% 81.3%
3177460 3270.1.1.0 a+b two layers › a+b domain in heme oxygenase › a+b domain in heme oxygenase › a+b domain in heme oxygenase 0.54 44.0 4.14e-01 93.6% 78.0%
3408941 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.53 38.0 3.83e-01 89.7% 75.0%
4026643 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.53 37.0 3.67e-01 74.4% 69.4%
5046708 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.53 44.0 3.76e-01 94.9% 96.3%
3387201 5.1.3.20 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › PD40 0.52 44.0 2.94e-01 92.3% 75.4%
3305644 5.3.1.2 beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II › B_lectin 0.52 42.0 3.64e-01 91.0% 56.5%
4872853 330.2.1.1 a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) › Ribosomal_S30AE 0.52 35.0 3.28e-01 70.5% 58.8%
3912265 316.1.1.6 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Mab-21 0.52 39.0 2.82e-01 84.6% 42.4%
4018116 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.51 45.0 3.96e-01 100.0% 91.5%
4608418 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.51 37.0 3.69e-01 89.7% 72.9%
3304346 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.51 35.0 3.65e-01 73.1% 80.0%
3461521 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.51 39.0 3.50e-01 100.0% 58.3%
3062973 4059.1.1.1 a+b complex topology › Serpins › Serpins › Serpins › Serpin 0.50 39.0 2.62e-01 84.6% 30.4%
3433881 5.3.1.2 beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II › B_lectin 0.50 36.0 3.06e-01 75.6% 68.9%
3925738 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.50 38.0 3.45e-01 84.6% 59.1%
5081827 206.1.1.9 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › RIO1 0.50 42.0 3.02e-01 100.0% 52.3%
3259407 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.50 37.0 3.65e-01 89.7% 74.1%