←Back to structures
NC_071139.1__YP_010684831.1__PQZ66_gp01__00001
Bact-VirNC_071139.1__YP_010684831.1__PQZ66_gp01__00001
Identity
- Accession:
- NC_071139 ↗
- Kingdom:
- phage
Quality
76.9
mean pLDDT
Taxonomy
TaxID: 2759197
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-25
Domain cluster:
representative
CATH (32)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2qcuB01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.65 | 45.0 | 2.72e-01 | 88.0% | 9.6% |
| 3ihlB00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.64 | 41.0 | 2.56e-01 | 100.0% | 10.9% |
| 3iayA03 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.63 | 40.0 | 2.58e-01 | 100.0% | 19.7% |
| 4v19W00 | 3.90.470.10 | Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › Ribosomal protein L22/L17 | 0.63 | 38.0 | 2.61e-01 | 100.0% | 69.3% |
| 1vq8R00 | 3.90.470.10 | Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › Ribosomal protein L22/L17 | 0.63 | 39.0 | 2.64e-01 | 96.0% | 93.3% |
| 5ib9A01 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.62 | 44.0 | 2.62e-01 | 100.0% | 24.9% |
| 1p1hB01 | 3.30.2360.10 | Alpha Beta › 2-Layer Sandwich › Glyceraldehyde-3-phosphate dehydrogenase-like fold › Glyceraldehyde-3-phosphate dehydrogenase-like domain | 0.62 | 41.0 | 2.67e-01 | 96.0% | 13.6% |
| 2r5rA00 | 3.10.270.10 | Alpha Beta › Roll › Urate Oxidase › Urate Oxidase; | 0.62 | 37.0 | 2.37e-01 | 100.0% | 19.9% |
| 3pjvD02 | 6.20.270.20 | Special › Other non-globular › Carboxypeptidase Inhibitor; Chain A › LapD/MoxY periplasmic domain | 0.61 | 40.0 | 3.81e-01 | 100.0% | 50.0% |
| 6qdws00 | 3.90.470.10 | Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › Ribosomal protein L22/L17 | 0.61 | 41.0 | 2.96e-01 | 96.0% | 75.2% |
| 5x8tT00 | 3.90.470.10 | Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › Ribosomal protein L22/L17 | 0.60 | 38.0 | 2.66e-01 | 96.0% | 77.8% |
| 3e0jA01 | 3.60.21.50 | Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › | 0.59 | 41.0 | 2.39e-01 | 84.0% | 82.9% |
| 1cp9A01 | 1.10.439.10 | Mainly Alpha › Orthogonal Bundle › Penicillin Amidohydrolase; domain 1 › Penicillin Amidohydrolase, domain 1 | 0.59 | 42.0 | 2.76e-01 | 80.0% | 13.7% |
| 2xcmC00 | 2.60.40.790 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.59 | 38.0 | 3.00e-01 | 96.0% | 62.0% |
| 2qomB00 | 2.40.128.130 | Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain | 0.59 | 39.0 | 2.39e-01 | 100.0% | 12.6% |
| 7trwA01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.59 | 39.0 | 2.95e-01 | 96.0% | 22.8% |
| 3pp9B00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.58 | 37.0 | 2.44e-01 | 96.0% | 31.0% |
| 5odnC00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.56 | 35.0 | 2.78e-01 | 100.0% | 70.6% |
| 2mh9A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 37.0 | 2.63e-01 | 96.0% | 78.7% |
| 3ke2B00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 37.0 | 2.84e-01 | 96.0% | 30.2% |
| 4zg5A00 | 3.40.1210.10 | Alpha Beta › 3-Layer(aba) Sandwich › Stationary-phase Survival Protein Sure Homolog; Chain: A, › Survival protein SurE-like phosphatase/nucleotidase | 0.55 | 39.0 | 2.40e-01 | 96.0% | 9.7% |
| 1se8A02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.55 | 33.0 | 2.60e-01 | 96.0% | 32.4% |
| 3lxrF00 | 1.10.4120.20 | Mainly Alpha › Orthogonal Bundle › SopE-like GEF fold › | 0.55 | 40.0 | 2.52e-01 | 100.0% | 11.6% |
| 1cp9B02 | 2.30.120.10 | Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region | 0.54 | 37.0 | 3.14e-01 | 100.0% | 34.2% |
| 3t91B00 | 3.60.40.10 | Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain | 0.54 | 32.0 | 2.09e-01 | 92.0% | 12.8% |
| 1hbxA01 | 3.40.1810.10 | Alpha Beta › 3-Layer(aba) Sandwich › SRF-like › Transcription factor, MADS-box | 0.54 | 36.0 | 2.95e-01 | 76.0% | 26.8% |
| 1fm2B03 | 2.30.120.10 | Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region | 0.54 | 36.0 | 3.03e-01 | 92.0% | 53.0% |
| 3n77A00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.53 | 39.0 | 2.66e-01 | 84.0% | 14.9% |
| 1ilvA00 | 3.40.1210.10 | Alpha Beta › 3-Layer(aba) Sandwich › Stationary-phase Survival Protein Sure Homolog; Chain: A, › Survival protein SurE-like phosphatase/nucleotidase | 0.52 | 32.0 | 2.08e-01 | 100.0% | 13.5% |
| 1nz8A00 | 3.30.70.940 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › NusG, N-terminal domain | 0.52 | 30.0 | 2.32e-01 | 100.0% | 47.9% |
| 1dw9A02 | 3.30.1160.10 | Alpha Beta › 2-Layer Sandwich › Cyanate Lyase; Chain: A, domain 2 › Cyanate lyase, C-terminal domain | 0.52 | 41.0 | 3.27e-01 | 100.0% | 36.8% |
| 5cflA02 | 3.40.50.12100 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Stimulator of interferon genes protein | 0.51 | 34.0 | 2.43e-01 | 92.0% | 15.6% |
ECOD (35)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3455390 | 207.1.1.55 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1,LRR_8 | 0.71 | 51.0 | 2.85e-01 | 100.0% | 6.1% |
| 3993311 | 873.1.1.5 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › HNOB | 0.70 | 49.0 | 3.32e-01 | 100.0% | 18.5% |
| 4037134 | 812.1.1.1 ↗ | a+b duplicates or obligate multimers › MinE-like › Cell division protein MinE topological specificity domain › Cell division protein MinE topological specificity domain › MinE | 0.70 | 50.0 | 4.01e-01 | 100.0% | 37.1% |
| 4990063 | 231.1.4.1 ↗ | a+b two layers › MocoBD/DmpA-related › MocoBD/DmpA-related › Apc (acetophenone carboxylase) beta subunit middle domain › Hydantoinase_B | 0.68 | 44.0 | 2.87e-01 | 100.0% | 23.2% |
| 3401203 | 59.1.3.0 ↗ | beta complex topology › triple barrel › triple barrel › RNA polymerase I subunits A49/A34.5 dimerization domains | 0.68 | 48.0 | 3.54e-01 | 88.0% | 50.6% |
| 3351840 | 284.1.3.2 ↗ | a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › OSR1_C | 0.67 | 48.0 | 3.85e-01 | 96.0% | 34.8% |
| 4266807 | 812.1.1.1 ↗ | a+b duplicates or obligate multimers › MinE-like › Cell division protein MinE topological specificity domain › Cell division protein MinE topological specificity domain › MinE | 0.66 | 46.0 | 4.27e-01 | 96.0% | 53.3% |
| 4012111 | 812.2.1.0 ↗ | a+b duplicates or obligate multimers › MinE-like › Cyanase C-terminal domain › Cyanase C-terminal domain | 0.65 | 44.0 | 3.70e-01 | 96.0% | 44.4% |
| 4955690 | 327.10.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ribosome-binding factor A (RbfA)-related › Ribosome-binding factor A (RbfA)-related | 0.65 | 43.0 | 3.54e-01 | 96.0% | 34.3% |
| 3971622 | 327.13.1.2 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif I in type III secretion system › Ring-building motif I in type III secretion system › YscJ_FliF_C | 0.65 | 47.0 | 3.10e-01 | 92.0% | 16.4% |
| 3718125 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.65 | 51.0 | 3.00e-01 | 100.0% | 9.5% |
| 4809699 | 3781.1.1.1 ↗ | a+b two layers › Ribosomal protein L11/L12e N-terminal domain-like › Ribosomal protein L11/L12e N-terminal domain › Ribosomal protein L11/L12e N-terminal domain › Ribosomal_L11_N | 0.63 | 45.0 | 3.61e-01 | 84.0% | 32.3% |
| 3457901 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.62 | 42.0 | 2.76e-01 | 96.0% | 16.4% |
| 3305599 | 304.55.1.20 ↗ | a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › Helitron_like_N, REP_ORF2-G2P | 0.61 | 40.0 | 3.14e-01 | 96.0% | 26.7% |
| 3964735 | 2.9.1.1 ↗ | beta barrels › OB-fold › RNB domain-like › RNB domain-like › RNB | 0.60 | 43.0 | 2.45e-01 | 100.0% | 6.0% |
| 4954828 | 12.1.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain | 0.59 | 47.0 | 4.02e-01 | 84.0% | 42.0% |
| 4998750 | 512.1.1.2 ↗ | a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd | 0.59 | 38.0 | 2.84e-01 | 100.0% | 72.2% |
| 4595166 | 5076.2.1.0 ↗ | alpha complex topology › Mitochondrial ADP/ATP carrier-like › Putative sulfate permease CysZ › Putative sulfate permease CysZ | 0.59 | 42.0 | 2.61e-01 | 96.0% | 10.7% |
| 1125237 | 218.2.1.1 ↗ | a+b two layers › Enolase-N/ribosomal protein › Ribosomal protein L22 › Ribosomal protein L22 › Ribosomal_L22 | 0.59 | 39.0 | 2.84e-01 | 84.0% | 100.0% |
| 5045478 | 7527.1.1.1 ↗ | a/b three-layered sandwiches › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE | 0.58 | 38.0 | 2.31e-01 | 88.0% | 51.4% |
| 4824578 | 206.1.1.7 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PI3_PI4_kinase | 0.58 | 38.0 | 3.56e-01 | 100.0% | 47.3% |
| 4797758 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.57 | 38.0 | 3.94e-01 | 92.0% | 76.7% |
| 3641356 | 221.1.1.44 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Rad60-SLD | 0.56 | 40.0 | 3.25e-01 | 88.0% | 29.3% |
| 3721350 | 312.1.1.11 ↗ | a+b three layers › HIT-like › HIT-related › HIT-related › Ap4A_phos_N | 0.55 | 39.0 | 2.54e-01 | 96.0% | 14.3% |
| 3591474 | 4106.1.1.1 ↗ | few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC | 0.55 | 36.0 | 2.30e-01 | 88.0% | 13.6% |
| 3602516 | 7527.1.1.1 ↗ | a/b three-layered sandwiches › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE | 0.55 | 37.0 | 2.28e-01 | 92.0% | 8.7% |
| 3456292 | 2.1.1.134 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › GIDE | 0.54 | 40.0 | 2.73e-01 | 96.0% | 20.0% |
| 3806670 | 108.1.1.20 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_like | 0.54 | 34.0 | 2.59e-01 | 100.0% | 22.6% |
| 4023083 | 7579.1.1.36 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_3 | 0.54 | 39.0 | 2.47e-01 | 84.0% | 11.1% |
| 3483425 | 3745.1.1.0 ↗ | alpha bundles › Sodium/Calcium exchanger › Sodium/Calcium exchanger › Sodium/Calcium exchanger | 0.54 | 32.0 | 1.87e-01 | 100.0% | 8.6% |
| 4212883 | 7573.1.1.4 ↗ | a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › UPRTase | 0.53 | 36.0 | 2.34e-01 | 100.0% | 12.2% |
| 4880598 | 3070.2.1.0 ↗ | a+b complex topology › N0 domain in phage tail proteins and secretins-like › TonB-dependent receptor plug domain › TonB-dependent receptor plug domain | 0.53 | 34.0 | 3.37e-01 | 92.0% | 46.9% |
| 3841567 | 7573.1.1.4 ↗ | a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › UPRTase | 0.53 | 34.0 | 2.23e-01 | 100.0% | 12.6% |
| 3356202 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.52 | 39.0 | 2.30e-01 | 100.0% | 7.5% |
| 3618146 | 109.4.1.32 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › MIF4G | 0.51 | 34.0 | 2.05e-01 | 96.0% | 8.3% |