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NC_071139.1__YP_010684837.1__PQZ66_gp07__00007

Bact-Vir

NC_071139.1__YP_010684837.1__PQZ66_gp07__00007

Identity

Accession:
NC_071139 ↗
Kingdom:
phage

Quality

87.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Bimevirus› Klebsiella_phage_vB_KleM_KB2

TaxID: 2759197

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-56
PDB
Domain cluster: representative
CATH (40)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5utkA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.74 50.0 4.27e-01 100.0% 43.3%
7y8sA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.72 54.0 4.53e-01 100.0% 47.4%
3egrA00 3.10.20.520 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phenylacetic acid degradation B 0.72 55.0 5.27e-01 100.0% 73.0%
2jxtA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.71 54.0 4.96e-01 100.0% 61.8%
8afoA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.67 45.0 3.92e-01 100.0% 44.3%
1owwA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.67 46.0 3.98e-01 100.0% 44.1%
6z3tA01 1.10.3370.10 Mainly Alpha › Orthogonal Bundle › Preprotein translocase SecY subunit › SecY subunit domain 0.64 53.0 3.23e-01 94.5% 38.7%
3up1A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.64 44.0 3.68e-01 100.0% 39.4%
6kryA01 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.64 54.0 4.14e-01 100.0% 72.5%
4wtxA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.63 44.0 3.81e-01 100.0% 44.3%
1mt1B00 3.50.20.10 Alpha Beta › 3-Layer(bba) Sandwich › Pyruvoyl-Dependent Histidine Decarboxylase; Chain B › Pyruvoyl-Dependent Histidine Decarboxylase, subunit B 0.62 49.0 4.07e-01 100.0% 46.4%
2q2rA02 3.40.367.20 Alpha Beta › 3-Layer(aba) Sandwich › Hexokinase; domain 1 › 0.62 50.0 3.51e-01 94.5% 94.6%
3qvnA02 3.55.40.20 Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › Iron/manganese superoxide dismutase, C-terminal domain 0.61 39.0 3.06e-01 100.0% 29.9%
2kl5A00 3.50.4.20 Alpha Beta › 3-Layer(bba) Sandwich › Hepatocyte Growth Factor › Uncharacterised protein DUF1027 0.61 50.0 4.12e-01 100.0% 48.2%
4pofA03 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.60 45.0 4.68e-01 100.0% 90.0%
4d10F01 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.60 50.0 3.60e-01 100.0% 49.2%
6kjhA01 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.59 45.0 2.82e-01 87.3% 48.7%
2jeuA02 2.170.200.10 Mainly Beta › Beta Complex › Regulatory Protein E2; Chain: A; Domain 2 › Papillomavirus E2 early protein domain 0.58 50.0 4.20e-01 100.0% 75.2%
4p6bB00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.58 44.0 2.71e-01 87.3% 53.5%
2qx2A00 3.10.570.10 Alpha Beta › Roll › sex pheromone staph- cam373 precursor fold › sex pheromone staph- cam373 precursor domain 0.58 44.0 2.76e-01 85.5% 26.7%
6s2wA01 3.30.2260.10 Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary 0.56 49.0 4.32e-01 100.0% 65.9%
3cu7A05 2.60.40.1930 Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain 0.56 41.0 3.47e-01 100.0% 43.4%
6se8A04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 47.0 3.88e-01 100.0% 52.8%
1lxnA00 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 46.0 3.90e-01 100.0% 74.5%
1kfiA04 3.30.310.50 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain 0.54 43.0 3.55e-01 100.0% 100.0%
2v3sA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.54 46.0 3.94e-01 100.0% 96.9%
1xvsA00 2.60.40.1470 Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain 0.54 42.0 3.44e-01 100.0% 42.3%
3pz8C00 2.40.240.130 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › 0.54 46.0 4.15e-01 100.0% 90.1%
1vjvA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.53 45.0 2.86e-01 100.0% 18.5%
2jvuA00 2.60.40.2290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 39.0 3.37e-01 100.0% 46.9%
1tvgA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.53 44.0 3.42e-01 100.0% 51.5%
5zi7A02 3.30.2010.30 Alpha Beta › 2-Layer Sandwich › Zincin-like › 0.52 36.0 3.26e-01 90.9% 48.2%
3r7wB02 3.30.450.190 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.52 40.0 3.24e-01 87.3% 85.6%
5hdwA00 2.60.40.1470 Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain 0.51 39.0 3.19e-01 100.0% 39.7%
1rh8A00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.51 41.0 3.23e-01 100.0% 45.1%
4iilA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.51 42.0 2.96e-01 90.9% 49.2%
1g6gB00 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.51 43.0 3.39e-01 100.0% 93.5%
1ogpA02 2.60.40.650 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 43.0 3.37e-01 100.0% 45.7%
5h66A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 35.0 2.50e-01 100.0% 21.9%
2jkgA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.50 39.0 2.76e-01 83.6% 87.9%
ECOD (42)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4444441 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.74 53.0 4.00e-01 100.0% 31.1%
3906455 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.74 53.0 5.22e-01 100.0% 70.0%
3600531 4012.3.1.0 ↗ a+b two layers › SSHS domain › SSHS domain in CRISPR-associated endonuclease Cas9 › SSHS domain in CRISPR-associated endonuclease Cas9 0.74 58.0 5.96e-01 100.0% 90.6%
1560 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.74 53.0 4.41e-01 100.0% 44.2%
3916178 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.72 50.0 4.89e-01 100.0% 66.7%
3223684 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.72 55.0 4.45e-01 100.0% 43.8%
2060725 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.70 49.0 4.45e-01 100.0% 54.7%
3933396 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.68 53.0 4.35e-01 100.0% 45.7%
4330212 302.4.1.0 ↗ a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit 0.62 50.0 4.02e-01 100.0% 45.2%
3573883 302.1.1.1 ↗ a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.61 49.0 3.97e-01 100.0% 46.4%
4928213 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.60 52.0 4.87e-01 100.0% 88.6%
5049973 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.60 47.0 3.51e-01 85.5% 34.3%
3931565 304.20.1.1 ↗ a+b two layers › Alpha-beta plaits › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP_RNA-bind 0.60 49.0 3.81e-01 96.4% 82.9%
3779194 11.1.1.3 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ig 0.60 46.0 3.84e-01 100.0% 47.0%
5047389 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.59 44.0 3.40e-01 81.8% 95.4%
3645411 223.1.1.79 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › GAF_NLP 0.58 47.0 3.26e-01 100.0% 45.5%
3908673 11.1.1.652 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ribophorin_II_3rd 0.57 45.0 3.48e-01 100.0% 37.0%
4964955 223.2.1.63 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › DUF7522 0.56 42.0 3.18e-01 80.0% 48.8%
3889864 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 36.0 3.65e-01 100.0% 67.3%
3434076 1118.1.1.1 ↗ a+b complex topology › Anchorless fibronectin/fibrinogen binding protein C-terminal domain › Anchorless fibronectin/fibrinogen binding protein C-terminal domain › Anchorless fibronectin/fibrinogen binding protein C-terminal domain › NFACT-R_1 0.56 46.0 4.12e-01 100.0% 69.4%
3659633 304.7.1.2 ↗ a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors › Inhibitor_I9 0.55 43.0 3.79e-01 94.5% 95.8%
3241420 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.55 40.0 2.51e-01 78.2% 87.8%
4558763 223.2.1.20 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_1 0.55 42.0 3.29e-01 89.1% 76.3%
3934469 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 44.0 3.49e-01 100.0% 40.8%
3171616 11.1.1.642 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig-like_Pom152_1 0.55 48.0 3.66e-01 100.0% 52.3%
3739712 223.2.1.10 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Gtr1_RagA 0.54 38.0 2.94e-01 85.5% 30.0%
5051941 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.54 41.0 3.17e-01 87.3% 72.9%
3930206 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 39.0 3.32e-01 100.0% 45.0%
5044631 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.54 41.0 3.21e-01 87.3% 78.5%
5051398 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.53 38.0 3.03e-01 78.2% 86.7%
3599877 304.25.1.0 ↗ a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain 0.53 45.0 3.05e-01 96.4% 98.1%
5047827 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.53 41.0 3.20e-01 87.3% 77.7%
5046621 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.53 41.0 3.21e-01 87.3% 81.6%
4947839 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.53 38.0 3.05e-01 80.0% 51.2%
3923606 2492.1.1.0 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.52 43.0 3.33e-01 100.0% 39.3%
4972248 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 37.0 2.94e-01 87.3% 31.5%
5049138 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.51 39.0 3.12e-01 90.9% 37.0%
4020851 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.51 39.0 3.10e-01 89.1% 86.2%
4011485 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 42.0 3.25e-01 100.0% 52.9%
2580652 304.139.2.1 ↗ a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7f/Csy3 › Cas_Csy3 0.51 38.0 2.40e-01 83.6% 62.0%
2060362 2004.1.1.481 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_29 0.51 35.0 2.50e-01 100.0% 21.9%
5045521 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.50 36.0 2.86e-01 81.8% 80.7%