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NC_071139.1__YP_010684914.1__PQZ66_gp84__00084

Bact-Vir

NC_071139.1__YP_010684914.1__PQZ66_gp84__00084

Identity

Accession:
NC_071139 ↗
Kingdom:
phage

Quality

87.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-53
PDB
Domain cluster: representative
CATH (38)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4g12A02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.77 59.0 4.17e-01 82.4% 28.9%
2lqxA00 6.10.250.1700 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.76 52.0 5.65e-01 72.5% 90.2%
1xdxA01 3.30.1140.40 Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › Tctex-1 0.76 57.0 4.64e-01 84.3% 43.0%
2l37A00 6.10.250.890 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.76 55.0 5.82e-01 84.3% 93.0%
3p01A01 6.10.140.590 Special › Helix non-globular › Helix Hairpins › 0.75 50.0 4.34e-01 70.6% 44.6%
2ficB00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.72 54.0 3.63e-01 84.3% 24.4%
6lumD01 1.20.1300.10 Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit 0.71 58.0 4.39e-01 90.2% 36.8%
1br0A00 1.20.58.70 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.71 56.0 4.24e-01 86.3% 40.0%
2vk9A04 1.10.274.80 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › 0.71 49.0 3.92e-01 78.4% 35.6%
3vkgA14 6.10.140.1060 Special › Helix non-globular › Helix Hairpins › 0.69 56.0 4.88e-01 92.2% 86.3%
4iggA01 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.68 49.0 4.51e-01 76.5% 61.2%
1x4tA01 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.68 50.0 4.90e-01 92.2% 72.4%
2wmmA01 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.68 48.0 4.89e-01 78.4% 77.6%
3lssA01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.68 55.0 4.32e-01 92.2% 50.9%
4a18O00 3.30.390.110 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › 0.68 57.0 4.32e-01 100.0% 59.0%
4fd4A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.67 49.0 3.31e-01 84.3% 19.3%
3akjA02 1.10.1070.20 Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, Domain 5 › 0.67 56.0 3.81e-01 98.0% 25.4%
4r42A01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.66 53.0 3.66e-01 92.2% 25.7%
4n4gA01 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.65 51.0 4.08e-01 90.2% 90.1%
4gf0A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.65 52.0 4.11e-01 92.2% 45.1%
5jrcA00 1.20.58.2140 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.65 49.0 3.39e-01 90.2% 23.1%
8b9zK01 1.10.287.3510 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.64 53.0 4.55e-01 100.0% 61.5%
7zxkC01 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.64 50.0 3.65e-01 90.2% 96.0%
1b5lA00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.64 48.0 3.49e-01 84.3% 97.4%
4etrB00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.63 49.0 3.81e-01 88.2% 38.5%
8hk0B03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.63 50.0 3.78e-01 92.2% 62.3%
6fakA02 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.63 51.0 4.35e-01 88.2% 65.4%
2v6eA01 1.10.287.3180 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.63 51.0 4.54e-01 92.2% 64.0%
4okvE00 6.10.140.1890 Special › Helix non-globular › Helix Hairpins › 0.62 53.0 4.95e-01 100.0% 80.0%
1ywfA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.62 50.0 3.37e-01 100.0% 39.8%
4s3mB02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.61 45.0 3.70e-01 84.3% 50.0%
3fxdB00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.61 45.0 4.34e-01 92.2% 70.7%
3i2fA02 1.10.3020.10 Mainly Alpha › Orthogonal Bundle › alpha-amino acid ester hydrolase ( Helical cap domain) › alpha-amino acid ester hydrolase ( Helical cap domain) 0.60 49.0 4.07e-01 94.1% 78.9%
1ax8A00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.59 47.0 3.52e-01 90.2% 34.6%
1j1jA02 1.20.58.200 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 0.59 43.0 3.79e-01 86.3% 50.6%
3axjB02 1.20.58.200 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 0.58 46.0 4.02e-01 92.2% 56.5%
2r18A02 1.10.8.880 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Birnavirus VP3 protein, domain 2 0.58 40.0 3.93e-01 78.4% 66.1%
4gzrC00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.58 44.0 4.26e-01 92.2% 78.7%
ECOD (64)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3228717 103.4.1.1 alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › KIX 0.86 66.0 5.74e-01 84.3% 56.0%
3213576 1145.1.1.0 few secondary structure elements › nigellin-1.1 › nigellin-1.1 › nigellin-1.1 0.83 55.0 6.25e-01 70.6% 100.0%
4567807 397.7.1.6 few secondary structure elements › Toxic hairpin › Ribosome-inactivating protein luffin P1 › Ribosome-inactivating protein luffin P1 › PF29718 0.83 62.0 5.75e-01 84.3% 63.1%
3960393 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.82 60.0 4.53e-01 78.4% 33.3%
5059539 1075.1.1.3 alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › ABC2_membrane_2 0.81 71.0 4.52e-01 100.0% 21.6%
3542152 397.7.1.7 few secondary structure elements › Toxic hairpin › Ribosome-inactivating protein luffin P1 › Ribosome-inactivating protein luffin P1 › BSMAP 0.80 61.0 5.10e-01 86.3% 47.8%
3993948 571.1.1.0 alpha arrays › Replisome organizer (g39p helicase loader/inhibitor protein) › Replisome organizer (g39p helicase loader/inhibitor protein) › Replisome organizer (g39p helicase loader/inhibitor protein) 0.79 56.0 5.22e-01 78.4% 60.0%
3489683 198.1.1.0 alpha arrays › Saposin-like › Saposin-like › Saposin-like 0.78 67.0 5.98e-01 100.0% 69.3%
4436874 397.7.1.1 few secondary structure elements › Toxic hairpin › Ribosome-inactivating protein luffin P1 › Ribosome-inactivating protein luffin P1 › Vicilin_N 0.76 58.0 6.09e-01 84.3% 93.3%
3948171 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.76 59.0 4.56e-01 84.3% 39.1%
3643902 5086.1.1.0 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.76 61.0 4.59e-01 100.0% 36.2%
3406162 4006.1.1.13 alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › DUF842 0.75 65.0 4.93e-01 100.0% 40.8%
3287859 106.1.1.11 alpha arrays › Globin-like › Globin-like › Globin-like › RsbRD_N 0.75 64.0 5.02e-01 100.0% 60.9%
4402607 605.1.1.142 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HWE_HK 0.75 59.0 5.62e-01 86.3% 73.3%
3646025 632.22.1.67 alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats › DUF842 0.75 62.0 4.56e-01 92.2% 41.5%
3641319 621.1.1.1 alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › GBP_C 0.75 62.0 4.47e-01 100.0% 31.5%
3730254 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.74 63.0 4.45e-01 100.0% 38.2%
4927302 1075.1.2.0 alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain 0.73 64.0 4.70e-01 100.0% 87.9%
4369880 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.72 55.0 4.42e-01 84.3% 42.0%
3347379 3470.1.1.26 extended segments › Glycophorin-A transmembrane domain › Glycophorin-A transmembrane domain › Glycophorin-A transmembrane domain › DUF543 0.72 60.0 5.62e-01 100.0% 75.4%
3436096 2004.1.1.364 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD+Helicase_C 0.72 59.0 3.38e-01 94.1% 20.9%
3618935 192.15.1.77 alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › OST3_OST6 0.71 60.0 4.75e-01 100.0% 64.3%
4027876 1198.1.1.0 alpha bundles › BTA121 › BTA121 › BTA121 0.71 61.0 4.46e-01 100.0% 64.1%
3639968 1128.1.1.1 alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR 0.71 59.0 4.40e-01 94.1% 36.9%
3466340 10.12.1.1 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding 0.71 59.0 3.84e-01 94.1% 23.1%
3260418 5043.1.1.0 extended segments › Sensor proteins transmembrane domains › Htr2 transmembrane domain-like › Htr2 transmembrane domain-like 0.71 57.0 5.41e-01 100.0% 75.4%
4057733 610.3.1.1 alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain › GatB_Yqey 0.71 57.0 3.80e-01 94.1% 40.9%
3963735 5069.1.3.1 alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits › Sdh_cyt 0.71 57.0 4.51e-01 100.0% 42.5%
3567180 4177.1.1.61 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › PLC-beta_C 0.70 60.0 3.93e-01 100.0% 21.7%
3229793 198.1.1.0 alpha arrays › Saposin-like › Saposin-like › Saposin-like 0.70 58.0 5.06e-01 100.0% 67.1%
4294845 397.7.1.1 few secondary structure elements › Toxic hairpin › Ribosome-inactivating protein luffin P1 › Ribosome-inactivating protein luffin P1 › Vicilin_N 0.69 57.0 5.45e-01 92.2% 80.0%
4632127 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.69 54.0 4.71e-01 92.2% 58.8%
4136906 5069.1.3.1 alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits › Sdh_cyt 0.69 57.0 4.45e-01 100.0% 40.8%
3572341 371.1.1.4 few secondary structure elements › Phospholipase A2, PLA2 › Phospholipase A2, PLA2 › Phospholipase A2, PLA2 › PLA2G12 0.69 54.0 4.15e-01 86.3% 38.3%
3294636 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.69 57.0 4.53e-01 100.0% 48.7%
5035704 3843.1.1.0 alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K 0.68 57.0 4.48e-01 100.0% 62.5%
3242655 7023.1.1.0 alpha bundles › helical ridge domain of D-alanyl transfer protein › helical ridge domain of D-alanyl transfer protein › helical ridge domain of D-alanyl transfer protein 0.68 54.0 4.34e-01 90.2% 86.7%
3990494 198.1.1.0 alpha arrays › Saposin-like › Saposin-like › Saposin-like 0.68 51.0 4.40e-01 88.2% 50.6%
5017842 5058.1.1.0 alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region 0.68 56.0 4.88e-01 100.0% 64.7%
3228302 601.1.2.0 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) 0.68 52.0 4.03e-01 86.3% 72.5%
3285558 150.8.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › PPE › PPE 0.68 54.0 3.94e-01 98.0% 85.9%
3184912 109.26.1.1 alpha superhelices › Repetitive alpha hairpins › Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains › Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains › Nucleoporin_C 0.67 58.0 3.33e-01 96.1% 27.6%
2474881 397.7.1.0 few secondary structure elements › Toxic hairpin › Ribosome-inactivating protein luffin P1 › Ribosome-inactivating protein luffin P1 0.67 48.0 4.92e-01 78.4% 89.4%
3380124 109.4.1.1266 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Arm, ARM_PUB 0.67 48.0 2.90e-01 78.4% 12.6%
3236694 174.1.1.0 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.67 52.0 3.90e-01 90.2% 57.1%
4608212 397.7.1.1 few secondary structure elements › Toxic hairpin › Ribosome-inactivating protein luffin P1 › Ribosome-inactivating protein luffin P1 › Vicilin_N 0.67 58.0 5.38e-01 100.0% 80.0%
3414672 4177.1.1.0 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.66 56.0 3.87e-01 100.0% 27.4%
3839762 1008.1.1.0 alpha bundles › BRCC36 C-terminal helical domain › BRCC36 C-terminal helical domain › BRCC36 C-terminal helical domain 0.65 49.0 4.21e-01 84.3% 52.9%
3463858 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.65 51.0 4.26e-01 100.0% 48.0%
4309108 1008.1.1.66 alpha bundles › BRCC36 C-terminal helical domain › BRCC36 C-terminal helical domain › BRCC36 C-terminal helical domain › DGCcoil 0.64 50.0 3.92e-01 92.2% 41.6%
3402099 5043.2.1.5 extended segments › Sensor proteins transmembrane domains › NarQ transmembrane domain › NarQ transmembrane domain › ATP_synt_H 0.64 53.0 4.79e-01 100.0% 69.3%
3970238 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.64 50.0 3.56e-01 92.2% 28.0%
3773859 604.1.1.1 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin 0.64 51.0 4.11e-01 92.2% 48.6%
3599948 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.64 48.0 3.15e-01 82.4% 17.9%
2968353 3758.2.1.2 alpha bundles › Bacterial hemolysins-like › Biopolymer transport protein ExbB › Biopolymer transport protein ExbB 0.63 53.0 3.46e-01 100.0% 36.1%
3706043 323.1.1.6 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › Carn_acyltransf 0.63 54.0 3.85e-01 98.0% 40.0%
5074304 7516.1.1.2 a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 0.63 53.0 3.25e-01 98.0% 14.7%
3227678 632.1.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain 0.62 51.0 4.23e-01 98.0% 80.0%
3470998 3718.1.1.2 alpha bundles › Flagellar protein fliT › Flagellar protein fliT › Flagellar protein fliT › NAD4L 0.62 51.0 4.63e-01 98.0% 81.3%
3188597 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.61 47.0 4.06e-01 92.2% 58.9%
3270478 6155.1.1.4 alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › MPC 0.60 47.0 3.86e-01 92.2% 46.7%
3780651 3602.1.1.0 alpha bundles › Kinase suppressor of Ras 1 helical hairpin domain › Kinase suppressor of Ras 1 helical hairpin domain › Kinase suppressor of Ras 1 helical hairpin domain 0.58 48.0 4.52e-01 100.0% 75.4%
4823831 6004.1.1.2 extended segments › FATC domain › FATC domain › FATC domain › ETC_C1_NDUFA5 0.57 48.0 3.80e-01 96.1% 58.3%
3838594 7023.1.1.0 alpha bundles › helical ridge domain of D-alanyl transfer protein › helical ridge domain of D-alanyl transfer protein › helical ridge domain of D-alanyl transfer protein 0.55 46.0 3.62e-01 100.0% 53.6%