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NC_071148.1__YP_010685427.1__PRB85_gp11__00011

Bact-Vir

NC_071148.1__YP_010685427.1__PRB85_gp11__00011

Identity

Accession:
NC_071148 ↗
Kingdom:
phage

Quality

83.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Klebsiella_phage_KP591P3

TaxID: 2968666

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-72
PDB
Domain cluster: rep: ON602758.1__UVX31569.1__M12a_00058__00058__D4-73
CATH (36)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2p84A02 2.30.30.290 Mainly Beta › Roll › SH3 type barrels. › YopX-like domains 0.69 48.0 4.74e-01 73.9% 68.5%
3k8uA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.68 53.0 4.36e-01 85.5% 90.8%
3p8bB02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.68 47.0 4.95e-01 73.9% 90.3%
8axiA01 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.65 52.0 3.31e-01 89.9% 35.5%
3a2yA00 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.64 50.0 3.76e-01 87.0% 75.7%
4ebgA00 3.10.450.560 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.64 51.0 4.62e-01 88.4% 97.9%
7wffb01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.64 47.0 3.13e-01 79.7% 44.0%
4c5eC02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.63 44.0 3.98e-01 73.9% 82.3%
4gr5C01 3.90.820.10 Alpha Beta › Alpha-Beta Complex › Rubredoxin-like › Structural Genomics, Unknown Function 30-nov-00 1gh9 Mol_id 0.62 36.0 3.79e-01 81.2% 60.9%
1iwlA00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.62 44.0 3.37e-01 76.8% 79.7%
1lckA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 47.0 5.01e-01 81.2% 100.0%
2gc9B00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.61 52.0 3.98e-01 95.7% 88.2%
5jozA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.60 47.0 3.21e-01 91.3% 54.8%
4ifaA01 3.40.33.10 Alpha Beta › 3-Layer(aba) Sandwich › Pathogenesis-related Protein p14a › CAP 0.60 42.0 2.80e-01 72.5% 83.9%
1df0A02 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.58 50.0 4.62e-01 100.0% 88.0%
4ii1A02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 41.0 4.44e-01 87.0% 92.9%
1h6lA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.57 48.0 3.14e-01 98.6% 74.5%
3gqbA01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.57 39.0 3.87e-01 72.5% 67.6%
1q7fB00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.56 47.0 3.22e-01 98.6% 85.1%
1cruA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.55 46.0 2.89e-01 98.6% 88.2%
2cudA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 45.0 4.32e-01 94.2% 78.5%
4r3dA03 2.60.120.1680 Mainly Beta › Sandwich › Jelly Rolls › 0.55 46.0 3.76e-01 100.0% 48.2%
3e0rA02 3.10.180.40 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › C3-degrading proteinase like domains 0.55 36.0 3.02e-01 81.2% 38.0%
3fgbA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 42.0 2.78e-01 89.9% 61.3%
1wdiA02 2.40.10.240 Mainly Beta › Beta Barrel › Thrombin, subunit H › QueA-like 0.54 39.0 3.83e-01 75.4% 100.0%
2p4oA01 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.54 45.0 3.07e-01 98.6% 84.2%
1a1rA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.53 37.0 3.52e-01 94.2% 60.0%
3i9v700 3.30.920.80 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › NADH-quinone oxidoreductase, subunit 15 0.53 38.0 3.20e-01 76.8% 59.1%
1r8oB01 2.30.30.480 Mainly Beta › Roll › SH3 type barrels. › 0.53 34.0 3.49e-01 79.7% 68.2%
3fb9B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.52 42.0 3.98e-01 91.3% 78.6%
3kl7A00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.52 38.0 2.71e-01 76.8% 98.6%
7knlA01 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.52 40.0 3.47e-01 85.5% 79.8%
3hrpA02 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.51 41.0 2.88e-01 100.0% 87.5%
1mtpA02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.51 38.0 3.50e-01 79.7% 79.1%
1w0pA03 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 43.0 3.25e-01 100.0% 66.8%
1crmA00 3.10.200.10 Alpha Beta › Roll › Carbonic Anhydrase II › Alpha carbonic anhydrase 0.51 41.0 2.89e-01 94.2% 73.0%
ECOD (59)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4348606 4.1.1.440 ↗ beta barrels › SH3 › SH3 › SH3 › PF27165 0.75 51.0 5.31e-01 71.0% 86.2%
4995678 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 52.0 5.69e-01 72.5% 98.2%
5033075 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 49.0 5.38e-01 71.0% 87.3%
5058671 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 48.0 5.31e-01 71.0% 87.3%
4950396 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 48.0 5.24e-01 73.9% 87.3%
5036616 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.71 49.0 4.90e-01 71.0% 71.4%
4990212 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 49.0 5.35e-01 72.5% 92.7%
4994957 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 52.0 5.71e-01 91.3% 98.2%
4026678 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.69 47.0 4.73e-01 71.0% 71.4%
4975150 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 51.0 5.40e-01 92.8% 93.3%
4997767 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 41.0 4.86e-01 79.7% 95.6%
3609597 4.1.1.236 ↗ beta barrels › SH3 › SH3 › SH3 › KOWx_SPT5 0.67 43.0 4.55e-01 71.0% 75.0%
5025079 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 48.0 5.25e-01 91.3% 96.4%
4952887 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 46.0 4.97e-01 73.9% 90.9%
3598284 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 43.0 4.70e-01 71.0% 83.6%
4046385 219.1.1.18 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39 0.66 53.0 4.20e-01 87.0% 84.3%
4193599 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 47.0 4.08e-01 75.4% 76.2%
3931905 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 46.0 3.90e-01 73.9% 88.7%
3634374 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.65 42.0 4.80e-01 72.5% 92.0%
3199895 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.65 42.0 3.79e-01 72.5% 48.4%
3279448 9.1.1.17 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › MoaF 0.64 45.0 3.66e-01 73.9% 77.4%
3948255 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 48.0 3.92e-01 79.7% 56.2%
4579331 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 43.0 4.48e-01 72.5% 79.4%
3499345 4325.1.1.0 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like 0.62 42.0 3.95e-01 71.0% 71.8%
3281552 881.4.1.3 ↗ a+b three layers › Mog1p/PsbP-like › C-terminal domain in sigma-E factor regulatory protein rseB › C-terminal domain in sigma-E factor regulatory protein rseB › DUF4245 0.62 43.0 3.51e-01 73.9% 86.7%
3366578 4.1.1.325 ↗ beta barrels › SH3 › SH3 › SH3 › KOW, KOW2_Spt5 0.62 43.0 3.69e-01 75.4% 84.2%
3586487 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 43.0 4.02e-01 87.0% 60.0%
3287032 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.61 47.0 3.06e-01 87.0% 39.1%
4662947 4.1.1.297 ↗ beta barrels › SH3 › SH3 › SH3 › YajC 0.61 40.0 4.17e-01 71.0% 73.8%
3564163 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.61 47.0 2.96e-01 88.4% 93.4%
3220742 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.60 44.0 3.33e-01 78.3% 75.4%
4015071 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 45.0 4.49e-01 91.3% 80.0%
4120506 243.11.1.4 ↗ a+b two layers › Cystatin-like › NP_346341.1 protein › NP_346341.1 protein › PF29632 0.60 48.0 4.63e-01 89.9% 97.5%
1759629 4.1.1.34 ↗ beta barrels › SH3 › SH3 › SH3 › MBT 0.60 44.0 3.80e-01 89.9% 50.5%
3814061 5.1.3.265 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_FKB95 0.59 47.0 3.13e-01 91.3% 35.8%
3448363 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.59 49.0 3.50e-01 97.1% 64.8%
4101502 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.58 42.0 4.54e-01 88.4% 98.1%
4011604 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.58 45.0 4.43e-01 91.3% 78.7%
3789647 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 40.0 3.21e-01 73.9% 43.9%
3914858 5.1.4.281 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Hyd_WA, Tectonin 0.57 45.0 3.04e-01 91.3% 84.4%
3570399 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 44.0 4.54e-01 88.4% 90.8%
4969674 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.57 45.0 2.94e-01 89.9% 40.8%
3934628 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 46.0 4.22e-01 88.4% 81.1%
3609116 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 45.0 3.86e-01 92.8% 81.2%
490 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.56 45.0 4.45e-01 92.8% 94.6%
3992786 11.1.1.1176 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Beta-prop_Rol-3 0.55 43.0 2.91e-01 88.4% 27.2%
3257279 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.55 46.0 2.75e-01 97.1% 43.8%
3841414 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.55 43.0 4.36e-01 89.9% 87.1%
5016556 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 43.0 3.98e-01 87.0% 77.8%
3693741 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 37.0 3.79e-01 73.9% 97.1%
3337961 5.1.3.144 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › b-prop_At3g26010-like 0.54 45.0 2.96e-01 98.6% 46.4%
3630782 4.1.1.51 ↗ beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.53 43.0 3.46e-01 91.3% 48.3%
2321269 4.1.1.46 ↗ beta barrels › SH3 › SH3 › SH3 › VEG 0.52 42.0 3.98e-01 91.3% 78.6%
3777518 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.52 44.0 3.07e-01 95.7% 67.3%
4058174 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.52 41.0 4.19e-01 91.3% 95.4%
3914794 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.51 44.0 3.20e-01 100.0% 79.0%
3582226 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.51 41.0 2.94e-01 89.9% 85.2%
3700775 292.2.1.0 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain 0.50 41.0 3.86e-01 100.0% 89.5%
5030390 4312.1.1.0 ↗ a+b two layers › RelE-like › RelE-like › RelE-like 0.50 37.0 3.48e-01 82.6% 98.9%
D2 high residues 86-168
PDB
Domain cluster: rep: KY883656.1__ASV43715.1__X__00045__D52-124
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF19905.5 best DUF6378 29.0 1.50e-06 97.6% 84.0%