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NC_072498.1__YP_010719520.1__P6F30_gp56__00056

Bact-Vir

NC_072498.1__YP_010719520.1__P6F30_gp56__00056

Identity

Accession:
NC_072498 ↗
Kingdom:
phage

Quality

93.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-66
PDB
CATH (49)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4h5bA00 3.30.1460.70 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.67 58.0 4.45e-01 100.0% 80.9%
3l44A01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.61 49.0 3.64e-01 93.7% 51.4%
2cy8A01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.61 52.0 3.79e-01 100.0% 54.5%
4hs5A00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.61 50.0 4.38e-01 98.4% 81.0%
5i92F01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.61 48.0 3.63e-01 92.1% 52.8%
2wb6A00 3.90.1150.90 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.60 45.0 3.78e-01 82.5% 52.6%
4j4hA01 3.40.50.12150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.60 51.0 4.02e-01 96.8% 54.1%
7cr6D01 3.100.10.20 Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain 0.59 38.0 3.55e-01 81.0% 50.0%
2ykyB01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.59 50.0 3.65e-01 98.4% 50.3%
4q05A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.58 48.0 3.14e-01 100.0% 80.7%
4zm3B01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.57 48.0 3.82e-01 98.4% 66.2%
2d0oB00 3.40.50.10150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › B12-dependent dehydatase associated subunit 0.57 47.0 4.09e-01 98.4% 80.6%
2rb7A01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.57 49.0 3.34e-01 100.0% 87.0%
3lxqA01 3.30.1120.80 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.57 35.0 3.03e-01 84.1% 38.4%
3kxeA00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.57 38.0 3.39e-01 82.5% 46.8%
3nvqA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 47.0 2.90e-01 100.0% 27.5%
3k6qA02 3.30.160.620 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.56 38.0 3.51e-01 85.7% 50.6%
1q67A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 40.0 3.14e-01 76.2% 45.7%
2giaB00 2.30.31.40 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › 0.56 42.0 3.28e-01 82.5% 47.9%
3drwB01 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.56 45.0 2.99e-01 98.4% 69.5%
2epjA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.56 47.0 3.53e-01 100.0% 57.4%
4fr9A00 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 42.0 3.36e-01 85.7% 66.7%
2jsnA00 2.30.42.40 Mainly Beta › Roll › Pdz3 Domain › 0.55 43.0 3.78e-01 85.7% 69.8%
4a17E01 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.55 45.0 4.18e-01 95.2% 90.6%
4n06A01 3.100.10.20 Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain 0.55 38.0 3.50e-01 71.4% 74.4%
3h1tA01 3.90.1570.30 Alpha Beta › Alpha-Beta Complex › tt1808, chain A › 0.55 46.0 3.72e-01 100.0% 90.5%
1iv0A00 3.30.420.140 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › YqgF/RNase H-like domain 0.55 38.0 3.40e-01 74.6% 51.0%
5yrzB00 3.30.920.30 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Hypothetical protein. 0.55 42.0 4.33e-01 93.7% 94.8%
2od0A00 3.30.1460.30 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › YgaC/TfoX-N like chaperone 0.55 46.0 4.02e-01 98.4% 94.2%
3hrgA01 3.30.420.250 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Protein of unknown function DUF3822, N-terminal domain 0.55 37.0 2.96e-01 71.4% 39.2%
2ltrA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.55 45.0 3.92e-01 96.8% 61.9%
2kouA00 3.30.160.380 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Dicer dimerisation domain 0.54 43.0 3.85e-01 96.8% 64.7%
1yqeA01 3.40.630.50 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › AF0625-like 0.54 45.0 3.34e-01 100.0% 90.3%
2czrA01 3.40.1350.70 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › TBP-interacting protein, N-terminal domain 0.54 45.0 3.89e-01 98.4% 84.9%
6gpkA02 3.90.25.10 Alpha Beta › Alpha-Beta Complex › UDP-galactose 4-epimerase; domain 1 › UDP-galactose 4-epimerase, domain 1 0.53 39.0 3.33e-01 81.0% 52.3%
3noyB02 3.30.413.10 Alpha Beta › 2-Layer Sandwich › Sulfite Reductase Hemoprotein; domain 1 › Sulfite Reductase Hemoprotein, domain 1 0.53 45.0 4.01e-01 100.0% 78.9%
3qwuA01 3.10.450.740 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 33.0 3.65e-01 90.5% 83.0%
3nx3A01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.52 42.0 3.48e-01 98.4% 58.2%
1mkyA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 44.0 3.42e-01 100.0% 89.1%
1j3wC00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.52 39.0 3.24e-01 87.3% 68.4%
3e9sA02 1.10.8.1190 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Papain-like viral protease, thumb domain 0.51 43.0 3.57e-01 98.4% 52.4%
1fgsA01 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.51 41.0 2.81e-01 96.8% 39.8%
1wguA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 41.0 3.48e-01 92.1% 84.3%
4jpdA00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.51 42.0 3.68e-01 98.4% 79.8%
3a54A01 2.40.50.340 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.51 38.0 3.45e-01 82.5% 64.4%
1itvA00 2.110.10.10 Mainly Beta › 4 Propeller › Hemopexin › Hemopexin-like domain 0.51 41.0 3.02e-01 95.2% 61.5%
3ajvC02 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.51 40.0 3.66e-01 93.7% 85.7%
3qijB03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 41.0 3.71e-01 92.1% 69.7%
1v2bB00 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.50 42.0 3.27e-01 98.4% 45.7%
ECOD (64)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4203354 252.2.1.9 a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › PF27551 0.70 61.0 5.38e-01 100.0% 82.1%
4034138 7520.1.1.0 a/b three-layered sandwiches › CinA-like › CinA-like › CinA-like 0.63 54.0 4.33e-01 100.0% 79.7%
3725907 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.62 48.0 4.72e-01 100.0% 79.7%
3928803 4967.1.1.0 alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases 0.61 48.0 3.42e-01 98.4% 27.5%
4218376 241.2.1.1 a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like › Frataxin_Cyay 0.59 50.0 4.40e-01 98.4% 84.0%
5006876 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.59 42.0 3.54e-01 77.8% 42.5%
5033617 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.59 43.0 3.52e-01 79.4% 40.0%
5044707 223.2.1.5 a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.59 42.0 3.42e-01 77.8% 38.4%
4960622 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.59 40.0 3.55e-01 81.0% 47.4%
3295705 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.59 48.0 3.87e-01 100.0% 44.4%
2581397 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.58 50.0 4.40e-01 100.0% 83.7%
5003862 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.58 41.0 3.28e-01 79.4% 34.3%
3519113 330.1.1.24 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Paxt-1_C 0.58 47.0 4.05e-01 95.2% 74.5%
4997643 2004.1.1.97 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MobB 0.58 50.0 3.52e-01 100.0% 71.4%
5046813 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.58 41.0 3.46e-01 79.4% 42.6%
2161921 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.58 43.0 4.05e-01 85.7% 85.9%
5072402 223.2.1.5 a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.57 41.0 3.40e-01 79.4% 39.2%
4927204 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.57 38.0 3.44e-01 81.0% 48.9%
5049690 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.57 42.0 3.37e-01 82.5% 37.9%
4977856 223.2.1.5 a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.57 40.0 3.21e-01 81.0% 35.6%
3758651 633.23.1.34 alpha bundles › Bromodomain-like › Claudin › Claudin › CD20 0.57 38.0 2.77e-01 71.4% 25.8%
3628286 223.2.1.33 a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_3 0.57 39.0 3.17e-01 79.4% 35.4%
3222419 331.23.1.0 a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain 0.57 41.0 3.95e-01 100.0% 68.0%
3627280 331.23.1.0 a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain 0.57 45.0 4.29e-01 98.4% 76.0%
3613468 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.56 45.0 4.55e-01 93.7% 93.8%
3965700 223.2.1.5 a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.56 39.0 3.29e-01 79.4% 39.5%
5074161 223.2.1.5 a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.56 41.0 3.33e-01 79.4% 41.1%
4525958 241.2.1.1 a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like › Frataxin_Cyay 0.56 47.0 4.09e-01 100.0% 82.4%
4972261 223.2.1.5 a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.56 41.0 3.33e-01 81.0% 63.7%
3214098 330.1.1.24 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Paxt-1_C 0.56 46.0 3.92e-01 96.8% 65.5%
4931934 241.9.1.0 a+b two layers › Type III secretory system chaperone-like › YdhG-like › YdhG-like 0.56 45.0 4.00e-01 98.4% 96.2%
3279356 223.2.1.5 a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.56 39.0 3.20e-01 81.0% 36.9%
3712990 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.56 44.0 4.33e-01 92.1% 85.7%
4073557 241.2.1.1 a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like › Frataxin_Cyay 0.55 45.0 3.93e-01 92.1% 82.0%
5047936 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.55 46.0 3.84e-01 98.4% 94.2%
5075537 223.2.1.5 a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.55 39.0 3.22e-01 81.0% 38.7%
4984108 223.2.1.5 a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.55 39.0 3.32e-01 79.4% 43.3%
3602439 873.1.1.11 a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › PF27343 0.55 38.0 3.19e-01 74.6% 78.1%
4949105 223.2.1.5 a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.54 39.0 3.29e-01 81.0% 42.6%
3881061 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.54 44.0 4.44e-01 95.2% 92.3%
5000860 223.2.1.5 a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.54 39.0 3.20e-01 82.5% 38.5%
3281830 223.2.1.5 a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.54 39.0 3.18e-01 81.0% 65.2%
4945195 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.54 38.0 3.29e-01 79.4% 45.2%
3740759 4099.1.1.3 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Spc24 0.54 41.0 4.24e-01 98.4% 90.0%
4976643 223.2.1.5 a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.54 38.0 3.18e-01 82.5% 39.2%
138176 330.1.1.3 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Dicer_dimer 0.54 43.0 3.85e-01 96.8% 64.7%
3501861 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.54 43.0 3.81e-01 96.8% 65.7%
4928516 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.54 38.0 3.26e-01 82.5% 42.4%
5075279 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.53 36.0 3.12e-01 73.0% 56.5%
4957253 223.2.1.5 a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.53 37.0 3.14e-01 81.0% 39.0%
3854926 883.1.1.1 a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP 0.53 46.0 2.83e-01 100.0% 38.8%
4051669 7502.1.1.0 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS 0.53 41.0 3.63e-01 87.3% 73.7%
3628889 7.1.1.0 beta barrels › PDZ domain › PDZ domain › PDZ domain 0.52 40.0 2.68e-01 87.3% 22.9%
5078587 223.2.1.5 a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.52 38.0 3.16e-01 87.3% 40.0%
5071935 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 43.0 3.58e-01 100.0% 95.4%
5076907 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 37.0 3.01e-01 81.0% 36.3%
3388895 220.1.1.170 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_alsin 0.52 40.0 3.39e-01 85.7% 57.3%
3988984 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.52 44.0 3.37e-01 98.4% 51.9%
3786078 109.4.1.1764 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF28917 0.52 35.0 2.14e-01 71.4% 18.8%
3612107 375.8.1.1 few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta › eIF-5_eIF-2B 0.51 34.0 3.52e-01 71.4% 73.3%
4532472 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.51 34.0 3.06e-01 76.2% 45.0%
3603250 223.2.1.5 a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.51 37.0 3.13e-01 81.0% 45.0%
4971771 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.51 42.0 3.23e-01 96.8% 69.4%
5040627 223.2.1.5 a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.51 40.0 3.29e-01 92.1% 69.2%