←Back to structures
NC_072500.1__YP_010719632.1__P6F32_gp19__00019
Bact-VirNC_072500.1__YP_010719632.1__P6F32_gp19__00019
Identity
- Accession:
- NC_072500 ↗
- Kingdom:
- phage
Quality
94.2
mean pLDDT
Taxonomy
TaxID: 2822848
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-175
Domain cluster:
rep: SR-VP_0-2_scaffold_141_4750547_curated_closed_complete_prodigal-single.1__X__X__00456__D4-87_157-220
CATH (39)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1cjmA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.77 | 58.0 | 5.26e-01 | 77.3% | 70.9% |
| 2if2A00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.77 | 56.0 | 5.40e-01 | 75.0% | 99.0% |
| 2vliB00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.76 | 59.0 | 5.93e-01 | 79.7% | 97.7% |
| 1khtB00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.76 | 55.0 | 5.35e-01 | 73.8% | 97.9% |
| 1rkbA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.76 | 57.0 | 5.70e-01 | 76.2% | 94.2% |
| 2qg6A00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.76 | 56.0 | 5.56e-01 | 76.2% | 96.7% |
| 1q44A00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.76 | 61.0 | 5.10e-01 | 83.7% | 67.6% |
| 3vaaA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.76 | 55.0 | 5.53e-01 | 75.0% | 97.7% |
| 1qf9A00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.75 | 55.0 | 5.32e-01 | 76.2% | 95.9% |
| 3kb2A00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.74 | 55.0 | 5.51e-01 | 75.6% | 96.5% |
| 1zd1B00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.73 | 60.0 | 5.28e-01 | 86.0% | 72.7% |
| 1osnC00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.72 | 53.0 | 4.31e-01 | 75.6% | 92.3% |
| 3hdtA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.69 | 51.0 | 5.15e-01 | 75.6% | 97.0% |
| 4wsiB03 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.68 | 50.0 | 4.74e-01 | 75.6% | 87.1% |
| 6wctD01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.68 | 47.0 | 5.07e-01 | 75.6% | 82.3% |
| 6hqvA02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.67 | 53.0 | 5.42e-01 | 82.6% | 97.6% |
| 1e2jA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.63 | 54.0 | 4.42e-01 | 90.1% | 97.7% |
| 3hv2A00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.62 | 42.0 | 4.63e-01 | 75.0% | 86.0% |
| 2hqoA00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.58 | 39.0 | 4.56e-01 | 76.7% | 99.2% |
| 3dhnA00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.58 | 42.0 | 3.93e-01 | 75.0% | 90.7% |
| 4o1hA00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.57 | 38.0 | 4.41e-01 | 75.0% | 95.0% |
| 3khtA00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.56 | 40.0 | 4.45e-01 | 75.6% | 95.5% |
| 2q5cA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.55 | 30.0 | 3.81e-01 | 76.2% | 91.8% |
| 2xtmA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.55 | 40.0 | 3.82e-01 | 75.6% | 90.3% |
| 3rjtA00 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.54 | 41.0 | 3.83e-01 | 78.5% | 96.3% |
| 3cssA00 | 3.40.50.1360 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.54 | 39.0 | 3.43e-01 | 74.4% | 92.4% |
| 6jmgB01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.54 | 40.0 | 4.01e-01 | 75.6% | 94.8% |
| 1jg7A01 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.53 | 38.0 | 3.78e-01 | 73.3% | 98.9% |
| 5ol0B01 | 3.40.50.1220 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › TPP-binding domain | 0.53 | 42.0 | 4.29e-01 | 84.9% | 84.3% |
| 1t90A02 | 3.40.309.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 2 › Aldehyde Dehydrogenase; Chain A, domain 2 | 0.53 | 38.0 | 3.61e-01 | 72.7% | 99.0% |
| 4kdcA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.53 | 38.0 | 3.59e-01 | 74.4% | 79.7% |
| 4h7nA02 | 3.40.309.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 2 › Aldehyde Dehydrogenase; Chain A, domain 2 | 0.52 | 37.0 | 3.59e-01 | 71.5% | 99.0% |
| 3gk5A00 | 3.40.250.10 | Alpha Beta › 3-Layer(aba) Sandwich › Oxidized Rhodanese; domain 1 › Rhodanese-like domain | 0.52 | 27.0 | 3.40e-01 | 82.0% | 83.0% |
| 4s1wB01 | 3.40.50.10490 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 | 0.52 | 41.0 | 3.94e-01 | 83.7% | 72.1% |
| 2duwA00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.52 | 36.0 | 4.01e-01 | 79.1% | 89.8% |
| 4jbeA02 | 3.40.309.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 2 › Aldehyde Dehydrogenase; Chain A, domain 2 | 0.52 | 37.0 | 4.06e-01 | 74.4% | 99.3% |
| 4ljsA02 | 3.40.50.1980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain | 0.51 | 35.0 | 3.79e-01 | 76.2% | 82.1% |
| 2q8pA02 | 3.40.50.1980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain | 0.51 | 35.0 | 3.58e-01 | 75.0% | 70.3% |
| 1ff9A01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.50 | 39.0 | 3.98e-01 | 82.6% | 98.2% |
ECOD (38)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4943200 | 2004.1.1.79 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Thymidylate_kin | 0.80 | 59.0 | 5.52e-01 | 76.2% | 94.8% |
| 3201725 | 2004.1.1.208 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_33 | 0.78 | 58.0 | 5.40e-01 | 76.2% | 94.8% |
| 3562445 | 2004.1.1.192 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_18 | 0.77 | 57.0 | 5.45e-01 | 76.2% | 94.0% |
| 5022262 | 2004.1.1.192 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_18 | 0.77 | 56.0 | 5.33e-01 | 74.4% | 99.5% |
| 4668518 | 2004.1.1.59 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › CoaE | 0.77 | 57.0 | 5.20e-01 | 75.6% | 89.1% |
| 3554065 | 2004.1.1.192 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_18 | 0.77 | 56.0 | 5.41e-01 | 75.6% | 94.9% |
| 343827 | 2004.1.1.208 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_33 | 0.76 | 59.0 | 5.93e-01 | 79.7% | 97.7% |
| 3633968 | 2004.1.1.216 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Sulfotransfer_4 | 0.76 | 61.0 | 5.63e-01 | 82.6% | 97.2% |
| 3602889 | 2004.1.1.191 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_17 | 0.76 | 56.0 | 5.39e-01 | 75.6% | 92.3% |
| 4066970 | 2004.1.1.41 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ADK | 0.76 | 56.0 | 5.18e-01 | 75.0% | 91.9% |
| 5031231 | 2004.1.1.192 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_18 | 0.76 | 55.0 | 5.39e-01 | 74.4% | 87.0% |
| 4457622 | 2004.1.1.59 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › CoaE | 0.74 | 55.0 | 5.26e-01 | 75.6% | 95.4% |
| 3588701 | 2004.1.1.50 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Guanylate_kin | 0.74 | 53.0 | 5.29e-01 | 73.3% | 97.8% |
| 4605395 | 2004.1.1.59 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › CoaE | 0.73 | 53.0 | 5.08e-01 | 75.6% | 98.5% |
| 4354223 | 2004.1.1.192 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_18 | 0.72 | 53.0 | 5.21e-01 | 75.6% | 96.2% |
| 4477375 | 2004.1.1.192 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_18 | 0.70 | 52.0 | 5.06e-01 | 76.7% | 94.7% |
| 3798014 | 2004.1.1.50 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Guanylate_kin | 0.69 | 50.0 | 4.54e-01 | 75.0% | 78.7% |
| 3798314 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.69 | 50.0 | 4.61e-01 | 75.0% | 82.2% |
| 3623838 | 2004.1.1.50 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Guanylate_kin | 0.66 | 48.0 | 4.81e-01 | 74.4% | 79.4% |
| 3845816 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.65 | 48.0 | 4.70e-01 | 75.0% | 90.8% |
| 3929327 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.65 | 47.0 | 4.80e-01 | 75.0% | 81.8% |
| 3887434 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.64 | 47.0 | 4.63e-01 | 74.4% | 92.8% |
| 1322887 | 2004.1.1.52 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Herpes_TK | 0.64 | 54.0 | 4.44e-01 | 90.1% | 97.4% |
| 5044161 | 2007.3.1.3 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Succinyl-CoA synthetase domains › Succinyl-CoA synthetase domains › Succ_CoA_lig | 0.64 | 47.0 | 4.70e-01 | 75.6% | 79.4% |
| 5048607 | 2007.3.1.3 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Succinyl-CoA synthetase domains › Succinyl-CoA synthetase domains › Succ_CoA_lig | 0.62 | 46.0 | 4.62e-01 | 76.2% | 83.4% |
| 3779005 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.62 | 57.0 | 3.88e-01 | 96.5% | 34.2% |
| 4947086 | 2007.3.1.3 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Succinyl-CoA synthetase domains › Succinyl-CoA synthetase domains › Succ_CoA_lig | 0.62 | 45.0 | 4.50e-01 | 75.6% | 77.2% |
| 5048492 | 2007.3.1.3 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Succinyl-CoA synthetase domains › Succinyl-CoA synthetase domains › Succ_CoA_lig | 0.61 | 45.0 | 4.53e-01 | 75.6% | 82.9% |
| 3194024 | 2003.1.6.6 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Tubulin nucleotide-binding domain-like › Misat_Tub_SegII+Tubulin_3 | 0.59 | 44.0 | 3.94e-01 | 77.9% | 97.2% |
| 3691417 | 2004.1.1.36 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Dynamin_N | 0.59 | 43.0 | 3.37e-01 | 75.6% | 98.1% |
| 5035578 | 2004.1.3.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III › POR | 0.58 | 46.0 | 4.35e-01 | 83.7% | 83.3% |
| 3205897 | 2003.1.5.71 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_33 | 0.56 | 39.0 | 3.25e-01 | 70.9% | 82.8% |
| 5077256 | 2004.1.3.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III › POR | 0.56 | 44.0 | 4.26e-01 | 83.7% | 88.5% |
| 4983949 | 2004.1.3.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III › POR | 0.55 | 44.0 | 4.18e-01 | 83.7% | 88.5% |
| 5009841 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.53 | 31.0 | 3.45e-01 | 85.5% | 71.5% |
| 3242826 | 323.1.1.3 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding | 0.51 | 38.0 | 3.44e-01 | 92.4% | 56.2% |
| 3268798 | 2003.1.1.39 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Sacchrp_dh_NADP | 0.51 | 39.0 | 3.58e-01 | 81.4% | 96.1% |
| 4978007 | 2003.1.1.388 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › DAP_DH_C | 0.50 | 36.0 | 3.56e-01 | 73.3% | 88.6% |