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NC_072811.1__YP_010731730.1__P7I17_gp05__00005
Bact-VirNC_072811.1__YP_010731730.1__P7I17_gp05__00005
Identity
- Accession:
- NC_072811 ↗
- Kingdom:
- phage
Quality
86.2
mean pLDDT
Taxonomy
TaxID: 2234092
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 204-323
Domain cluster:
representative
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6f2mA02 | 2.40.30.290 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.69 | 42.0 | 4.77e-01 | 100.0% | 82.8% |
| 2vrqA01 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.58 | 39.0 | 3.81e-01 | 100.0% | 62.1% |
| 6rptC00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 38.0 | 3.93e-01 | 100.0% | 75.9% |
| 2v5yA05 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 35.0 | 3.78e-01 | 99.2% | 79.4% |
| 1wapA00 | 2.60.40.50 | Mainly Beta › Sandwich › Immunoglobulin-like › TRAP-like | 0.53 | 26.0 | 3.23e-01 | 75.8% | 76.5% |
| 3zugB02 | 2.40.30.30 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like | 0.52 | 38.0 | 3.65e-01 | 100.0% | 65.5% |
| 1egjA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 33.0 | 3.57e-01 | 100.0% | 76.2% |
| 8owfA01 | 2.60.40.290 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 39.0 | 4.06e-01 | 100.0% | 87.4% |
| 7q61A01 | 2.60.40.1940 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 36.0 | 3.77e-01 | 100.0% | 80.7% |
| 5eh1A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 32.0 | 3.53e-01 | 100.0% | 78.9% |
| 1cov100 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.51 | 46.0 | 3.55e-01 | 100.0% | 63.2% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4991099 | 10.2.1.0 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) | 0.57 | 34.0 | 3.85e-01 | 98.3% | 77.8% |
| 4977180 | 10.12.1.39 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 | 0.53 | 27.0 | 2.91e-01 | 99.2% | 54.0% |
| 1879267 | 10.32.1.2 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › F5_F8_type_C | 0.52 | 36.0 | 3.24e-01 | 98.3% | 50.3% |
| 3219889 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.51 | 35.0 | 3.97e-01 | 98.3% | 94.4% |
| 5025697 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.50 | 40.0 | 4.09e-01 | 100.0% | 89.6% |
D2
high
residues 363-732
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF23845.2 best | TIM-barrel_NCTSP | 327.1 | 1.80e-97 | 96.0% | 98.6% |
CATH (71)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1b1yA00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.78 | 75.0 | 6.68e-01 | 100.0% | 97.6% |
| 4wiwD01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.78 | 57.0 | 6.49e-01 | 99.2% | 97.5% |
| 2aamC00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.77 | 57.0 | 6.47e-01 | 99.7% | 96.5% |
| 1mzhA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.77 | 46.0 | 5.84e-01 | 98.6% | 96.0% |
| 3ayvD00 | 3.20.20.150 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes | 0.77 | 50.0 | 6.14e-01 | 98.6% | 98.4% |
| 1kwgA01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.76 | 72.0 | 7.05e-01 | 97.8% | 97.7% |
| 4uniC01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.76 | 72.0 | 6.97e-01 | 97.8% | 93.5% |
| 1sgjA00 | 3.20.20.60 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphoenolpyruvate-binding domains | 0.74 | 46.0 | 5.74e-01 | 99.2% | 97.4% |
| 5uj6A03 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.73 | 57.0 | 6.18e-01 | 97.6% | 93.0% |
| 4ba0A02 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.73 | 58.0 | 5.75e-01 | 97.8% | 78.3% |
| 4qp0A00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.73 | 64.0 | 6.53e-01 | 99.2% | 93.8% |
| 1k77A00 | 3.20.20.150 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes | 0.73 | 51.0 | 5.97e-01 | 97.6% | 99.6% |
| 3up8A00 | 3.20.20.100 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › NADP-dependent oxidoreductase domain | 0.72 | 47.0 | 5.36e-01 | 99.2% | 84.7% |
| 1z41A00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.72 | 58.0 | 6.09e-01 | 98.1% | 90.8% |
| 5t99A03 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.71 | 52.0 | 5.86e-01 | 99.7% | 94.2% |
| 6d2xA01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.70 | 56.0 | 5.98e-01 | 98.1% | 92.6% |
| 3fn9A03 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.70 | 53.0 | 5.86e-01 | 99.2% | 93.0% |
| 3w4rA01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.70 | 55.0 | 6.00e-01 | 97.8% | 95.7% |
| 3qyqA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.70 | 43.0 | 5.04e-01 | 98.6% | 82.4% |
| 1rh9A00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.70 | 63.0 | 6.34e-01 | 97.8% | 92.4% |
| 4w88B00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.70 | 60.0 | 6.26e-01 | 99.2% | 96.2% |
| 7bobA01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.70 | 61.0 | 6.24e-01 | 97.8% | 93.5% |
| 4pmxA00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.69 | 54.0 | 5.94e-01 | 99.2% | 96.1% |
| 1b30A00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.69 | 54.0 | 5.97e-01 | 99.2% | 98.3% |
| 3tw6B03 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.69 | 50.0 | 4.39e-01 | 100.0% | 51.2% |
| 3ozoA02 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.69 | 66.0 | 6.48e-01 | 100.0% | 95.1% |
| 2c0hA00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.68 | 57.0 | 5.88e-01 | 97.6% | 90.7% |
| 1cecA00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.68 | 58.0 | 6.15e-01 | 99.7% | 98.5% |
| 3tjlA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.68 | 60.0 | 5.80e-01 | 100.0% | 83.9% |
| 4o1eB00 | 3.20.20.20 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Dihydropteroate synthase-like | 0.67 | 47.0 | 5.52e-01 | 100.0% | 98.1% |
| 1djqA01 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.67 | 60.0 | 5.93e-01 | 100.0% | 89.3% |
| 2xhyD00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.67 | 63.0 | 5.83e-01 | 99.2% | 98.1% |
| 3aysA00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.67 | 59.0 | 6.09e-01 | 100.0% | 95.8% |
| 6d1pB01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.67 | 52.0 | 5.71e-01 | 100.0% | 94.6% |
| 3weoA02 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.66 | 57.0 | 5.90e-01 | 98.1% | 95.6% |
| 2ftpA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.65 | 50.0 | 5.51e-01 | 100.0% | 95.0% |
| 7wmzC01 | 3.20.20.220 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › | 0.64 | 49.0 | 5.53e-01 | 97.8% | 100.0% |
| 1j93A00 | 3.20.20.210 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › | 0.64 | 54.0 | 5.58e-01 | 99.2% | 93.9% |
| 3vmnA02 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.64 | 59.0 | 5.92e-01 | 97.8% | 95.5% |
| 1e6pB01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.61 | 54.0 | 5.56e-01 | 98.9% | 95.2% |
| 4nnaA01 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.61 | 51.0 | 5.40e-01 | 99.2% | 94.9% |
| 4x7rA01 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.61 | 30.0 | 3.92e-01 | 85.9% | 81.9% |
| 6y1xB01 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.60 | 38.0 | 4.60e-01 | 81.9% | 93.1% |
| 1ur4A00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.60 | 57.0 | 5.60e-01 | 99.2% | 96.4% |
| 4jcmA01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.59 | 55.0 | 5.47e-01 | 97.8% | 95.6% |
| 1bmtA02 | 3.40.50.280 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Cobalamin-binding domain | 0.59 | 23.0 | 3.51e-01 | 87.0% | 82.9% |
| 3tauA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.58 | 18.0 | 3.01e-01 | 91.9% | 72.2% |
| 1ii7A01 | 3.60.21.10 | Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases | 0.58 | 39.0 | 4.63e-01 | 100.0% | 98.0% |
| 6y9tB01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.57 | 54.0 | 5.26e-01 | 98.1% | 95.2% |
| 3h8lA02 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.56 | 24.0 | 3.61e-01 | 91.9% | 92.1% |
| 1g5aA02 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.56 | 52.0 | 5.14e-01 | 97.8% | 96.4% |
| 2vptA00 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.55 | 30.0 | 3.98e-01 | 92.2% | 94.5% |
| 1ea0B03 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.55 | 44.0 | 4.27e-01 | 98.6% | 74.1% |
| 3pvsB01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.54 | 24.0 | 3.58e-01 | 94.1% | 95.4% |
| 3wrwA01 | 3.40.50.12020 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Uncharacterised protein family UPF0261, NN domain | 0.54 | 27.0 | 3.70e-01 | 92.4% | 91.4% |
| 4cqmG00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.54 | 32.0 | 4.00e-01 | 88.9% | 93.3% |
| 1bxkA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.54 | 35.0 | 4.19e-01 | 98.9% | 94.0% |
| 1jbkA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.54 | 27.0 | 3.71e-01 | 94.6% | 92.6% |
| 2c20A01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.53 | 29.0 | 3.80e-01 | 87.0% | 93.1% |
| 3ot6A00 | 3.90.226.10 | Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 | 0.53 | 29.0 | 3.60e-01 | 83.2% | 82.6% |
| 3av0A01 | 3.60.21.10 | Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases | 0.52 | 35.0 | 4.16e-01 | 95.4% | 97.6% |
| 3lf2A01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.52 | 33.0 | 3.93e-01 | 91.9% | 91.8% |
| 2afcA00 | 3.40.220.10 | Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 | 0.52 | 23.0 | 3.56e-01 | 94.1% | 99.3% |
| 3h7aA00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.52 | 30.0 | 3.87e-01 | 88.1% | 96.7% |
| 3svtA00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.52 | 33.0 | 3.79e-01 | 92.2% | 83.6% |
| 3p19B00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.51 | 31.0 | 3.91e-01 | 85.1% | 99.5% |
| 6m5nA00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.51 | 33.0 | 3.88e-01 | 87.0% | 91.5% |
| 3efoB04 | 3.40.50.410 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › von Willebrand factor, type A domain | 0.50 | 33.0 | 4.01e-01 | 92.4% | 98.4% |
| 1e6uA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.50 | 31.0 | 3.89e-01 | 89.2% | 99.5% |
| 4lvuA00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.50 | 34.0 | 4.10e-01 | 85.7% | 100.0% |
| 2gn4B01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.50 | 32.0 | 3.88e-01 | 97.0% | 95.0% |
ECOD (56)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4947267 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.82 | 67.0 | 7.15e-01 | 94.3% | 93.3% |
| 4975287 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.82 | 68.0 | 7.19e-01 | 94.3% | 94.2% |
| 4978361 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.82 | 67.0 | 7.11e-01 | 94.3% | 93.1% |
| 5076883 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.80 | 70.0 | 7.41e-01 | 98.9% | 99.7% |
| 4998574 | 2002.1.1.99 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › GHL10 | 0.79 | 67.0 | 6.87e-01 | 99.2% | 89.4% |
| 3431358 | 2002.1.1.64 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_14 | 0.78 | 74.0 | 6.89e-01 | 98.6% | 95.3% |
| 3655682 | 2002.1.1.64 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_14 | 0.78 | 75.0 | 6.58e-01 | 98.9% | 85.8% |
| 4944334 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.78 | 59.0 | 6.41e-01 | 99.2% | 90.6% |
| 5075114 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.78 | 75.0 | 7.37e-01 | 99.5% | 99.5% |
| None | — | 0.78 | 74.0 | 6.85e-01 | 99.2% | 95.1% | |
| 4955394 | 2002.1.1.112 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_114 | 0.77 | 51.0 | 6.13e-01 | 99.5% | 96.1% |
| 4308082 | 2002.1.1.94 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_42 | 0.76 | 72.0 | 7.03e-01 | 97.8% | 97.7% |
| 5052326 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.74 | 72.0 | 6.78e-01 | 99.2% | 93.4% |
| 4005479 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.74 | 57.0 | 4.83e-01 | 97.8% | 49.4% |
| 4602663 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.74 | 68.0 | 6.65e-01 | 97.8% | 89.2% |
| 3519552 | 2002.1.1.96 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › S-methyl_trans | 0.74 | 52.0 | 6.08e-01 | 95.4% | 98.1% |
| 2088112 | 2002.1.1.104 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_2_C | 0.73 | 57.0 | 6.20e-01 | 99.5% | 93.6% |
| 3624689 | 2002.1.1.30 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_18 | 0.73 | 56.0 | 6.06e-01 | 97.8% | 92.6% |
| 3990921 | 2002.1.1.104 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_2_C | 0.72 | 55.0 | 5.76e-01 | 97.8% | 84.5% |
| 5030753 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.72 | 66.0 | 6.76e-01 | 94.1% | 100.0% |
| 3721023 | 2002.1.1.45 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_31_2nd | 0.72 | 56.0 | 5.86e-01 | 98.1% | 85.9% |
| 3689505 | 2002.1.1.45 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_31_2nd | 0.72 | 56.0 | 4.97e-01 | 98.1% | 57.3% |
| 5026030 | 2002.1.1.45 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_31_2nd | 0.71 | 56.0 | 5.85e-01 | 97.8% | 86.4% |
| 2487113 | 2002.1.1.32 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Oxidored_FMN | 0.71 | 43.0 | 5.31e-01 | 74.9% | 90.9% |
| 4510477 | 2002.1.1.33 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_20 | 0.70 | 67.0 | 6.03e-01 | 100.0% | 98.2% |
| 4042439 | 2002.1.1.32 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Oxidored_FMN | 0.70 | 58.0 | 6.12e-01 | 100.0% | 94.5% |
| 3734400 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.69 | 60.0 | 4.96e-01 | 97.8% | 54.1% |
| 2429474 | 2002.1.1.151 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_53 | 0.68 | 55.0 | 6.00e-01 | 99.7% | 97.8% |
| 3185913 | 2002.1.1.32 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Oxidored_FMN | 0.68 | 60.0 | 6.10e-01 | 99.2% | 92.4% |
| 4978099 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.68 | 59.0 | 6.14e-01 | 97.8% | 97.1% |
| 5078000 | 2002.1.1.60 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 | 0.68 | 53.0 | 5.90e-01 | 99.7% | 99.3% |
| 5036307 | 2002.1.1.57 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › URO-D | 0.67 | 54.0 | 5.71e-01 | 99.5% | 93.2% |
| 4974804 | 7512.1.1.139 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › DUF1972 | 0.66 | 31.0 | 4.42e-01 | 94.3% | 92.0% |
| 4180126 | 2002.1.1.57 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › URO-D | 0.63 | 53.0 | 5.46e-01 | 98.6% | 91.7% |
| 4020699 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.62 | 57.0 | 5.54e-01 | 97.8% | 88.0% |
| 5061175 | 7512.1.1.30 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_4 | 0.62 | 30.0 | 4.20e-01 | 86.8% | 92.0% |
| 3939690 | 2002.1.1.68 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_56 | 0.60 | 57.0 | 5.55e-01 | 100.0% | 96.5% |
| 5055296 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.60 | 39.0 | 4.72e-01 | 80.5% | 97.9% |
| 4985079 | 2005.1.1.3 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp | 0.59 | 23.0 | 3.79e-01 | 86.8% | 94.8% |
| 5064933 | 2004.1.1.141 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › CTP_synth_N | 0.57 | 34.0 | 4.37e-01 | 89.5% | 100.0% |
| 4289388 | 2002.1.1.83 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Amidohydro_1 | 0.56 | 44.0 | 4.56e-01 | 94.1% | 85.7% |
| 2882159 | 2003.1.1.69 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › adh_short_C2 | 0.55 | 33.0 | 3.98e-01 | 92.2% | 86.1% |
| 4997061 | 7512.1.1.30 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_4 | 0.53 | 33.0 | 4.01e-01 | 96.5% | 92.1% |
| 4884308 | 2003.1.1.69 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › adh_short_C2 | 0.53 | 31.0 | 3.72e-01 | 92.7% | 81.6% |
| 4013308 | 2007.5.1.8 ↗ | a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › Lipase_GDSL_2 | 0.53 | 31.0 | 3.95e-01 | 92.4% | 95.0% |
| 4590511 | 2002.1.1.430 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › UxaE | 0.53 | 50.0 | 4.70e-01 | 99.7% | 87.2% |
| 3844249 | 2004.1.1.47 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › G-alpha | 0.52 | 32.0 | 3.76e-01 | 87.6% | 84.8% |
| 3279989 | 2003.1.1.142 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › KR, adh_short_C2 | 0.52 | 33.0 | 3.93e-01 | 92.7% | 91.6% |
| 5010636 | 2003.1.1.69 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › adh_short_C2 | 0.51 | 34.0 | 3.99e-01 | 85.9% | 91.7% |
| 3829751 | 2002.1.1.173 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › GH123_cat | 0.51 | 46.0 | 4.66e-01 | 99.2% | 94.6% |
| 4527528 | 2003.1.1.4 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains | 0.51 | 32.0 | 4.00e-01 | 83.5% | 100.0% |
| 4524377 | 2003.1.1.3 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › adh_short | 0.51 | 31.0 | 3.96e-01 | 88.6% | 100.0% |
| 1140519 | 2003.1.1.69 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › adh_short_C2 | 0.50 | 32.0 | 3.94e-01 | 83.0% | 98.3% |
| 3736614 | 2003.1.1.3 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › adh_short | 0.50 | 34.0 | 3.75e-01 | 84.3% | 81.0% |
| 5026050 | 2486.1.1.1 ↗ | a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › ECH_1 | 0.50 | 28.0 | 3.38e-01 | 92.7% | 78.4% |
| 3695488 | 2003.1.1.142 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › KR, adh_short_C2 | 0.50 | 34.0 | 4.03e-01 | 83.8% | 96.9% |
D3
high
residues 742-875
D4
medium
residues 12-79_97-114_171-198_330-343
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF23844.2 best | NCTSP_N | 62.4 | 4.90e-17 | 60.2% | 36.6% |
CATH (28)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2gysA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.58 | 35.0 | 4.02e-01 | 85.2% | 80.0% |
| 7uwjC02 | 2.60.40.2150 | Mainly Beta › Sandwich › Immunoglobulin-like › Interleukin-17 receptor A/B, fibronectin-III-like domain 2 | 0.58 | 32.0 | 3.54e-01 | 85.2% | 67.0% |
| 7uwjC01 | 2.60.40.2160 | Mainly Beta › Sandwich › Immunoglobulin-like › Interleukin-17 receptor A/B, fibronectin-III-like domain 1 | 0.57 | 33.0 | 3.47e-01 | 85.2% | 59.5% |
| 3pv7A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.57 | 31.0 | 3.58e-01 | 83.6% | 71.3% |
| 1h6eA02 | 2.60.40.1170 | Mainly Beta › Sandwich › Immunoglobulin-like › Mu homology domain, subdomain B | 0.56 | 37.0 | 4.10e-01 | 84.4% | 82.9% |
| 2ed8A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 30.0 | 3.55e-01 | 84.4% | 75.6% |
| 4hgzA02 | 2.20.25.570 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.55 | 27.0 | 3.80e-01 | 93.8% | 100.0% |
| 2yfoA03 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.55 | 39.0 | 4.45e-01 | 91.4% | 97.9% |
| 2ic2A00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 32.0 | 3.47e-01 | 85.2% | 68.3% |
| 3cc1A02 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.54 | 36.0 | 4.27e-01 | 90.6% | 98.9% |
| 4nzfD02 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.54 | 36.0 | 4.23e-01 | 90.6% | 96.7% |
| 5dcaA08 | 2.60.40.150 | Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain | 0.54 | 33.0 | 3.51e-01 | 84.4% | 69.1% |
| 4aqzA00 | 2.60.40.3470 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.54 | 32.0 | 3.15e-01 | 94.5% | 54.3% |
| 3butA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 32.0 | 3.26e-01 | 82.0% | 58.4% |
| 2xn2A03 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.54 | 38.0 | 4.36e-01 | 90.6% | 97.9% |
| 7dd9A02 | 2.70.98.30 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 | 0.54 | 48.0 | 3.85e-01 | 98.4% | 85.6% |
| 3unpA00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.54 | 46.0 | 4.05e-01 | 94.5% | 83.4% |
| 6phxA03 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.53 | 38.0 | 4.32e-01 | 91.4% | 97.9% |
| 2dh2A02 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.52 | 36.0 | 4.18e-01 | 90.6% | 100.0% |
| 3fn9A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 33.0 | 3.42e-01 | 84.4% | 67.5% |
| 7zgmA01 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.52 | 46.0 | 3.78e-01 | 100.0% | 77.0% |
| 5m59A06 | 2.60.40.150 | Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain | 0.52 | 32.0 | 3.41e-01 | 84.4% | 70.5% |
| 3a5vA02 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.51 | 35.0 | 3.91e-01 | 88.3% | 90.9% |
| 1ktbA02 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.51 | 34.0 | 3.96e-01 | 88.3% | 95.6% |
| 3h8uA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.51 | 35.0 | 3.59e-01 | 82.8% | 73.0% |
| 4nzjA03 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.51 | 33.0 | 3.86e-01 | 87.5% | 95.4% |
| 6g47A00 | 2.60.90.10 | Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Adenovirus pIV-related, attachment domain | 0.51 | 44.0 | 4.01e-01 | 96.9% | 98.2% |
| 1txkA01 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.50 | 44.0 | 3.19e-01 | 96.9% | 61.7% |
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3474323 | 10.32.1.33 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CIA30 | 0.66 | 58.0 | 5.11e-01 | 94.5% | 97.2% |
| 3181527 | 10.1.1.7 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_11 | 0.59 | 53.0 | 4.51e-01 | 96.9% | 94.6% |
| 3276036 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.57 | 42.0 | 3.37e-01 | 77.3% | 68.2% |
| 4630719 | 12.1.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain | 0.55 | 36.0 | 4.22e-01 | 90.6% | 94.4% |
| 3462371 | 10.32.1.198 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PP2 | 0.55 | 49.0 | 4.39e-01 | 97.7% | 94.3% |
| 4331518 | 11.1.1.805 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_PDGFR_d4 | 0.54 | 33.0 | 3.51e-01 | 83.6% | 69.1% |
| 3987517 | 12.1.1.27 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Glyco_hydro_36C | 0.53 | 38.0 | 4.32e-01 | 91.4% | 97.9% |
| 3651021 | 11.1.1.855 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF26102 | 0.53 | 31.0 | 3.37e-01 | 82.0% | 67.3% |
| 3999221 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.53 | 37.0 | 4.03e-01 | 95.3% | 88.6% |
| 2472970 | 12.1.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain | 0.52 | 37.0 | 4.25e-01 | 90.6% | 98.9% |
| 3940191 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 29.0 | 3.02e-01 | 86.7% | 53.6% |
| 4299499 | 12.3.1.24 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › YidC_periplas | 0.52 | 45.0 | 3.74e-01 | 97.7% | 82.1% |
| 4932962 | 12.1.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain | 0.52 | 42.0 | 4.47e-01 | 89.1% | 96.5% |
| 3216288 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 29.0 | 3.33e-01 | 84.4% | 75.6% |
| 3334367 | 11.1.1.635 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_N_CWD1 | 0.51 | 36.0 | 3.49e-01 | 84.4% | 65.7% |
D5
medium
residues 80-96_115-170_344-356
Domain cluster:
representative
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1vx7H01 | 3.90.930.12 | Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 | 0.50 | 36.0 | 3.62e-01 | 75.6% | 92.9% |