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NC_073050.1__YP_010740034.1__P9294_gp017__00017
Bact-VirNC_073050.1__YP_010740034.1__P9294_gp017__00017
Identity
- Accession:
- NC_073050 ↗
- Kingdom:
- phage
Quality
76.8
mean pLDDT
Taxonomy
TaxID: 2917160
Cluster
View cluster (2 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 4-102
Domain cluster:
rep: MH884508.1__AYP68297.1__vBBcoS136_00183__00165__D2-87
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7utzR02 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.64 | 50.0 | 3.68e-01 | 85.9% | 30.8% |
| 3wscA00 | 1.20.1420.20 | Mainly Alpha › Up-down Bundle › A middle domain of Talin 1 › M75 peptidase, HXXE motif | 0.54 | 46.0 | 3.49e-01 | 97.0% | 76.9% |
| 3nrkA01 | 1.10.4030.10 | Mainly Alpha › Orthogonal Bundle › Triger factor/SurA peptide-binding fold › Porin chaperone SurA, peptide-binding domain | 0.52 | 36.0 | 2.81e-01 | 71.7% | 72.3% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3580409 | 3826.1.1.26 ↗ | alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › RRP36 | 0.62 | 43.0 | 3.87e-01 | 70.7% | 62.2% |
| 4978597 | 4177.1.1.0 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like | 0.61 | 45.0 | 3.68e-01 | 77.8% | 45.4% |
| 3775826 | 4016.1.1.0 ↗ | alpha bundles › alpha-helical domain in type II DNA topoisomerase › alpha-helical domain in type II DNA topoisomerase › alpha-helical domain in type II DNA topoisomerase | 0.60 | 41.0 | 3.67e-01 | 70.7% | 60.0% |
| 3248809 | 2003.1.5.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases | 0.60 | 43.0 | 3.21e-01 | 75.8% | 31.0% |
| 3689543 | 3922.1.1.227 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › DUF6594 | 0.60 | 43.0 | 4.57e-01 | 74.7% | 89.4% |
| 3764271 | 3922.1.1.348 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › CC_CDK5RAP2 | 0.60 | 53.0 | 4.88e-01 | 97.0% | 81.6% |
| 3596530 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.59 | 41.0 | 2.99e-01 | 72.7% | 26.9% |
| 3735556 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.59 | 40.0 | 4.12e-01 | 70.7% | 77.9% |
| 4061849 | 192.7.1.2 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N | 0.58 | 49.0 | 4.73e-01 | 91.9% | 88.2% |
| 3581305 | 604.12.1.92 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › Meckelin | 0.58 | 43.0 | 3.43e-01 | 79.8% | 82.4% |
| 3262801 | 3788.1.1.0 ↗ | alpha bundles › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) | 0.57 | 39.0 | 3.67e-01 | 93.9% | 56.8% |
| 4942757 | 606.1.1.1 ↗ | alpha complex topology › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain › Nop | 0.57 | 40.0 | 4.01e-01 | 74.7% | 92.4% |
| 3741306 | 4970.1.1.14 ↗ | alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › RRP36 | 0.56 | 43.0 | 3.91e-01 | 80.8% | 60.7% |
| 4459302 | 3826.1.1.26 ↗ | alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › RRP36 | 0.56 | 42.0 | 3.77e-01 | 79.8% | 63.6% |
| 4049272 | 148.1.1.0 ↗ | alpha arrays › Histone-like › Histone-related › Histone | 0.55 | 35.0 | 3.16e-01 | 74.7% | 45.0% |
| 4029758 | 5076.1.1.1 ↗ | alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr | 0.52 | 45.0 | 3.35e-01 | 100.0% | 87.4% |
| 5059555 | 2004.1.1.87 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N | 0.52 | 41.0 | 2.85e-01 | 86.9% | 23.2% |