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NC_073050.1__YP_010740082.1__P9294_gp065__00065
Bact-VirNC_073050.1__YP_010740082.1__P9294_gp065__00065
Identity
- Accession:
- NC_073050 ↗
- Kingdom:
- phage
Quality
79.5
mean pLDDT
Taxonomy
TaxID: 2917160
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 32-69
Domain cluster:
rep: MN150686.1__QEG04222.1__X__00136__D36-73
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF20037.5 best | DUF6440 | 34.9 | 1.40e-08 | 100.0% | 75.5% |
CATH (39)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5fgoA00 | 3.10.450.700 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.82 | 70.0 | 5.92e-01 | 94.7% | 62.9% |
| 4nehA01 | 2.130.10.130 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Integrin alpha, N-terminal | 0.82 | 70.0 | 4.01e-01 | 100.0% | 10.5% |
| 3k44B00 | 3.30.2450.30 | Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › | 0.79 | 67.0 | 4.57e-01 | 100.0% | 30.7% |
| 1khiA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.78 | 61.0 | 4.92e-01 | 89.5% | 60.0% |
| 1s6lA02 | 3.15.10.60 | Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Alkylmercury lyase | 0.77 | 62.0 | 4.36e-01 | 94.7% | 44.2% |
| 4q8gA00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.76 | 62.0 | 3.59e-01 | 94.7% | 75.0% |
| 3hi2B00 | 3.30.2310.40 | Alpha Beta › 2-Layer Sandwich › YaeB-like fold › | 0.76 | 62.0 | 4.78e-01 | 100.0% | 48.5% |
| 1txdA02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.76 | 53.0 | 3.77e-01 | 84.2% | 24.0% |
| 3p54A02 | 3.30.67.10 | Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2 | 0.75 | 66.0 | 5.35e-01 | 100.0% | 53.5% |
| 1r7lA00 | 3.30.2120.10 | Alpha Beta › 2-Layer Sandwich › Bacillus phage protein › Bacillus phage protein-like | 0.75 | 56.0 | 4.12e-01 | 84.2% | 32.0% |
| 6htnA01 | 2.120.10.70 | Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin | 0.74 | 62.0 | 4.29e-01 | 100.0% | 33.6% |
| 1o97D01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.74 | 56.0 | 3.56e-01 | 84.2% | 17.5% |
| 5c17A00 | 3.30.450.410 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.74 | 61.0 | 3.82e-01 | 94.7% | 27.7% |
| 2kieA00 | 2.30.29.110 | Mainly Beta › Roll › PH-domain like › | 0.74 | 62.0 | 4.40e-01 | 100.0% | 36.3% |
| 3fssA01 | 2.30.29.120 | Mainly Beta › Roll › PH-domain like › | 0.72 | 61.0 | 4.22e-01 | 100.0% | 35.3% |
| 3rlfF03 | 2.40.430.10 | Mainly Beta › Beta Barrel › Periplasmic binding protein-like II › D-maltodextrin-binding protein, MBP | 0.72 | 60.0 | 4.73e-01 | 100.0% | 47.7% |
| 3tdgA01 | 3.10.450.520 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.72 | 60.0 | 5.13e-01 | 100.0% | 66.7% |
| 4myjA05 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.72 | 58.0 | 4.62e-01 | 100.0% | 87.5% |
| 3d4eA01 | 3.30.1450.10 | Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › | 0.69 | 50.0 | 3.92e-01 | 78.9% | 36.9% |
| 3kxtA00 | 2.30.30.610 | Mainly Beta › Roll › SH3 type barrels. › Chromatin protein Cren7 | 0.69 | 50.0 | 4.54e-01 | 81.6% | 66.1% |
| 4pavB00 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.68 | 49.0 | 3.45e-01 | 78.9% | 23.7% |
| 3f2gA00 | 3.30.450.410 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.68 | 54.0 | 3.48e-01 | 97.4% | 26.3% |
| 6w9rB01 | 3.90.70.80 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › | 0.68 | 54.0 | 3.63e-01 | 89.5% | 79.2% |
| 2eobA01 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.68 | 53.0 | 3.85e-01 | 92.1% | 46.9% |
| 1y96D00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.67 | 49.0 | 3.94e-01 | 81.6% | 42.2% |
| 2bs6A01 | 2.40.128.190 | Mainly Beta › Beta Barrel › Lipocalin › | 0.67 | 55.0 | 4.41e-01 | 100.0% | 70.2% |
| 5w7zA01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.67 | 49.0 | 3.54e-01 | 81.6% | 35.4% |
| 3k1lA01 | 3.30.457.40 | Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › | 0.65 | 52.0 | 4.13e-01 | 97.4% | 52.2% |
| 3g1jA00 | 2.30.30.350 | Mainly Beta › Roll › SH3 type barrels. › mobile metagenome of vibrio cholerae. Integron cassette protein vch_cass4. | 0.65 | 51.0 | 4.09e-01 | 97.4% | 70.0% |
| 2ix2B00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.65 | 51.0 | 3.26e-01 | 100.0% | 89.4% |
| 3ucqA04 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.64 | 48.0 | 3.90e-01 | 86.8% | 89.9% |
| 1mruA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.64 | 52.0 | 4.13e-01 | 100.0% | 90.2% |
| 1uh9A02 | 2.40.70.10 | Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases | 0.63 | 54.0 | 3.62e-01 | 97.4% | 84.6% |
| 1y5oA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.62 | 50.0 | 3.69e-01 | 97.4% | 53.9% |
| 2egcA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.61 | 48.0 | 4.01e-01 | 94.7% | 68.0% |
| 3wirA03 | 2.60.420.10 | Mainly Beta › Sandwich › Maltose phosphorylase, domain 3 › Maltose phosphorylase, domain 3 | 0.61 | 53.0 | 4.38e-01 | 100.0% | 55.1% |
| 1p6pA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.61 | 50.0 | 3.60e-01 | 100.0% | 31.2% |
| 1avwB00 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.59 | 46.0 | 3.17e-01 | 97.4% | 94.2% |
| 4qq1C03 | 2.40.128.240 | Mainly Beta › Beta Barrel › Lipocalin › | 0.58 | 45.0 | 3.70e-01 | 97.4% | 42.0% |
ECOD (46)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5063996 | 4121.1.1.1 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA | 0.88 | 72.0 | 4.38e-01 | 92.1% | 16.0% |
| 4972785 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.86 | 61.0 | 5.61e-01 | 76.3% | 59.2% |
| 3672898 | 295.1.1.3 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PurA | 0.85 | 70.0 | 4.79e-01 | 92.1% | 30.4% |
| 3986751 | 3197.1.1.0 ↗ | a+b two layers › N-terminal domain of effector protein PipB2 › N-terminal domain of effector protein PipB2 › N-terminal domain of effector protein PipB2 | 0.84 | 70.0 | 4.98e-01 | 94.7% | 33.6% |
| 3364063 | 295.1.1.3 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PurA | 0.84 | 72.0 | 4.88e-01 | 100.0% | 30.7% |
| 3632911 | 243.3.1.49 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Saf4_Yju2 | 0.83 | 71.0 | 5.51e-01 | 100.0% | 55.3% |
| 3743299 | 4026.1.1.0 ↗ | a+b three layers › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) | 0.81 | 70.0 | 5.05e-01 | 100.0% | 38.2% |
| 3796352 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.80 | 65.0 | 5.48e-01 | 92.1% | 61.5% |
| 3719143 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.79 | 65.0 | 4.50e-01 | 97.4% | 89.6% |
| 5040665 | 2004.1.1.198 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 | 0.78 | 66.0 | 3.62e-01 | 100.0% | 20.5% |
| 3920675 | 295.1.1.3 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PurA | 0.77 | 64.0 | 5.21e-01 | 97.4% | 53.3% |
| 3167972 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.77 | 63.0 | 3.37e-01 | 94.7% | 35.7% |
| 5001101 | 7089.1.1.0 ↗ | a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD | 0.77 | 62.0 | 5.33e-01 | 89.5% | 56.7% |
| 3251953 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.76 | 62.0 | 5.94e-01 | 94.7% | 93.3% |
| 4027723 | 252.2.1.0 ↗ | a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like | 0.76 | 64.0 | 5.35e-01 | 100.0% | 54.3% |
| 3802876 | 5.1.3.67 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 | 0.76 | 65.0 | 3.82e-01 | 100.0% | 15.2% |
| 3823795 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.75 | 57.0 | 3.50e-01 | 89.5% | 29.4% |
| 5826 | 330.5.1.2 ↗ | a+b two layers › dsRBD-like › Bacillus phage protein › Bacillus phage protein › Phage_ABA_S | 0.75 | 56.0 | 4.12e-01 | 84.2% | 32.0% |
| 3894646 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.74 | 61.0 | 3.73e-01 | 97.4% | 26.2% |
| 3433041 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.74 | 60.0 | 3.65e-01 | 100.0% | 25.8% |
| 4982145 | 216.1.1.4 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › RWD | 0.73 | 61.0 | 4.35e-01 | 97.4% | 37.5% |
| 4937757 | 246.2.1.9 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos_2 | 0.73 | 61.0 | 4.05e-01 | 100.0% | 100.0% |
| 1423566 | 331.4.1.3 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › AdenylateSensor | 0.73 | 59.0 | 4.87e-01 | 97.4% | 63.2% |
| 2491145 | 219.1.1.50 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH_1 | 0.72 | 57.0 | 3.23e-01 | 94.7% | 58.4% |
| 3193334 | 5.1.5.39 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Rax2 | 0.72 | 59.0 | 3.33e-01 | 100.0% | 8.5% |
| 3617175 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.71 | 51.0 | 4.61e-01 | 92.1% | 54.5% |
| 3504458 | 206.1.1.70 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, ABC1 | 0.71 | 58.0 | 3.51e-01 | 100.0% | 25.9% |
| 4000403 | 4.1.1.28 ↗ | beta barrels › SH3 › SH3 › SH3 › BPL_C | 0.71 | 51.0 | 4.77e-01 | 89.5% | 60.0% |
| 4028916 | 241.15.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain | 0.71 | 57.0 | 4.23e-01 | 97.4% | 60.9% |
| 4216985 | 331.19.1.2 ↗ | a+b two layers › TBP-like › Toxin RnlA N-terminal domains › Toxin RnlA N-terminal domains › RnlA_toxin_N | 0.70 | 59.0 | 4.66e-01 | 100.0% | 52.9% |
| 5040518 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.70 | 55.0 | 5.09e-01 | 89.5% | 98.0% |
| 3609520 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.69 | 56.0 | 4.36e-01 | 100.0% | 42.1% |
| 3730029 | 2007.1.3.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like | 0.69 | 56.0 | 3.61e-01 | 100.0% | 19.1% |
| 3867103 | 3417.1.1.1 ↗ | a+b three layers › Surfactant protein C BRICHOS domain › Surfactant protein C BRICHOS domain › Surfactant protein C BRICHOS domain › BRICHOS | 0.68 | 56.0 | 4.21e-01 | 97.4% | 40.0% |
| None | — | 0.67 | 52.0 | 2.89e-01 | 97.4% | 10.2% | |
| 3308710 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.67 | 48.0 | 4.02e-01 | 76.3% | 41.4% |
| 4024366 | 206.1.1.70 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, ABC1 | 0.66 | 55.0 | 3.30e-01 | 100.0% | 25.0% |
| 4002382 | 7525.1.1.2 ↗ | a/b three-layered sandwiches › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › His_Phos_2 | 0.65 | 52.0 | 3.13e-01 | 94.7% | 87.1% |
| 1271326 | 220.1.1.54 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_18 | 0.64 | 52.0 | 3.71e-01 | 100.0% | 37.2% |
| 5003966 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.62 | 51.0 | 4.37e-01 | 92.1% | 70.8% |
| 5045295 | 375.1.1.9 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-C4_Topoisom | 0.62 | 50.0 | 3.85e-01 | 92.1% | 86.7% |
| 5030311 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.61 | 45.0 | 4.01e-01 | 78.9% | 54.5% |
| 3310464 | 375.1.1.69 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zinc_ribbon_12 | 0.60 | 49.0 | 4.62e-01 | 100.0% | 80.0% |
| 3929586 | 4184.1.1.0 ↗ | beta barrels › MFPT repeat › MFPT repeat › MFPT repeat | 0.58 | 46.0 | 4.32e-01 | 89.5% | 70.0% |
| 5012108 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.57 | 45.0 | 2.74e-01 | 97.4% | 12.8% |
| 3270256 | 4.1.1.54 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_2 | 0.57 | 41.0 | 3.70e-01 | 89.5% | 49.2% |