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NC_073065.1__YP_010741157.1__P9610_gp47__00047

Bact-Vir

NC_073065.1__YP_010741157.1__P9610_gp47__00047

Identity

Accession:
NC_073065 ↗
Kingdom:
phage

Quality

74.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Dhillonvirus› Escherichia_phage_vB_EcoS_Zar3M

TaxID: 2924881

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 10-65
PDB
Domain cluster: rep: DQ777876.1__ABK00203.1__X__00057__D34-113
CATH (28)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1u3eM01 3.90.75.20 Alpha Beta › Alpha-Beta Complex › Homing Intron 3 (I-Ppo) Encoded Endonuclease; Chain A › 0.70 60.0 4.92e-01 98.2% 57.5%
4jpdA00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.63 45.0 3.75e-01 78.6% 89.9%
1dq3A02 3.30.160.90 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.58 44.0 3.99e-01 82.1% 97.4%
4b9wA01 2.40.50.90 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.57 42.0 3.51e-01 82.1% 47.2%
17gsA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.57 40.0 3.40e-01 75.0% 63.6%
4ms4B02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.57 40.0 2.87e-01 76.8% 57.2%
4msxA02 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.57 42.0 2.70e-01 80.4% 20.9%
4uriA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.56 34.0 3.34e-01 85.7% 55.9%
3ajvC02 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.56 41.0 3.61e-01 82.1% 84.6%
1r3nG01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.54 45.0 2.84e-01 94.6% 44.6%
3g12B00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.54 39.0 3.23e-01 80.4% 82.3%
3f0zA01 3.30.310.260 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.54 39.0 3.26e-01 82.1% 71.4%
6heiA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.54 40.0 2.53e-01 80.4% 21.9%
1g3pA01 2.30.27.10 Mainly Beta › Roll › Phage FD Coat Protein, Membrane penetration domain › Phage FD Coat Protein,Membrane penetration domain 0.54 40.0 3.51e-01 91.1% 52.3%
1tolA01 2.30.27.10 Mainly Beta › Roll › Phage FD Coat Protein, Membrane penetration domain › Phage FD Coat Protein,Membrane penetration domain 0.53 39.0 3.51e-01 80.4% 75.6%
6p2uA02 3.30.30.30 Alpha Beta › 2-Layer Sandwich › Defensin A-like › 0.53 38.0 3.95e-01 82.1% 100.0%
1kaxA02 3.30.30.30 Alpha Beta › 2-Layer Sandwich › Defensin A-like › 0.53 38.0 3.85e-01 80.4% 100.0%
2od0A00 3.30.1460.30 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › YgaC/TfoX-N like chaperone 0.52 37.0 3.16e-01 78.6% 82.5%
1ej6A04 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.52 37.0 2.53e-01 78.6% 35.2%
4lfhD02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 38.0 3.48e-01 85.7% 96.5%
1m0wA04 3.40.50.1760 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glutathione synthase, substrate-binding domain superfamily, eukaryotic 0.51 42.0 3.27e-01 92.9% 41.9%
4mnkA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.51 35.0 3.38e-01 83.9% 61.5%
5chtB00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.51 41.0 2.70e-01 94.6% 89.7%
4h0oA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.51 40.0 3.01e-01 96.4% 73.6%
2lc4A00 2.30.30.830 Mainly Beta › Roll › SH3 type barrels. › 0.50 39.0 3.33e-01 94.6% 64.9%
6ptrB01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.50 35.0 2.89e-01 75.0% 87.6%
3fm2A00 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.50 40.0 3.21e-01 96.4% 93.2%
2jaeA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.50 34.0 2.46e-01 73.2% 47.0%
ECOD (50)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3965202 378.1.1.19 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_3 0.87 78.0 6.13e-01 98.2% 67.3%
3260511 386.1.1.71 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › SURF2 0.69 44.0 4.45e-01 76.8% 65.5%
3503411 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.65 42.0 4.53e-01 73.2% 82.2%
3540779 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.64 42.0 4.47e-01 75.0% 76.0%
4962043 386.1.1.422 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › PF26266 0.63 42.0 4.30e-01 75.0% 70.9%
3750942 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.63 40.0 4.18e-01 73.2% 72.0%
3397452 386.1.1.4 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED 0.62 42.0 4.15e-01 75.0% 66.7%
4003164 632.7.1.1 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › HSP70 0.62 52.0 3.30e-01 100.0% 25.6%
3882068 386.1.1.4 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED 0.61 41.0 4.35e-01 75.0% 80.0%
3935829 386.1.1.4 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED 0.61 42.0 4.15e-01 75.0% 67.8%
4936643 247.1.1.1 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B 0.61 45.0 2.98e-01 85.7% 99.3%
3317170 386.1.1.4 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED 0.61 38.0 4.17e-01 75.0% 80.0%
4030191 5.1.5.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.60 49.0 2.77e-01 94.6% 44.2%
3783751 223.1.1.21 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › HODM_asu-like 0.60 43.0 2.69e-01 76.8% 16.1%
3867655 6129.1.1.1 ↗ beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD 0.59 51.0 3.44e-01 100.0% 44.9%
3098421 330.3.1.0 ↗ a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like 0.59 35.0 3.82e-01 82.1% 74.4%
3722945 2.1.1.39 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RNA_pol_Rbc25 0.59 44.0 3.43e-01 80.4% 73.3%
3715372 6110.1.1.1 ↗ alpha superhelices › Linker domain of cytoplasmic dynein heavy chain › Linker domain of cytoplasmic dynein heavy chain › Linker domain of cytoplasmic dynein heavy chain › DHC_N2 0.59 44.0 2.76e-01 80.4% 39.7%
4419934 4126.1.1.6 ↗ a/b three-layered sandwiches › beta-carbonic anhydrase-like › beta-carbonic anhydrase › beta-carbonic anhydrase › DabA 0.59 44.0 3.01e-01 83.9% 83.3%
3794324 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.59 42.0 3.96e-01 76.8% 65.7%
3928114 2484.1.1.1 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 0.59 49.0 2.97e-01 100.0% 18.6%
4632068 4126.1.1.6 ↗ a/b three-layered sandwiches › beta-carbonic anhydrase-like › beta-carbonic anhydrase › beta-carbonic anhydrase › DabA 0.59 44.0 2.94e-01 83.9% 83.7%
3330763 375.1.1.37 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TF_Zn_Ribbon 0.58 36.0 4.18e-01 80.4% 90.0%
3628498 386.1.1.4 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED 0.58 42.0 3.92e-01 76.8% 65.7%
4001939 386.1.1.4 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED 0.58 38.0 3.53e-01 75.0% 52.9%
4277063 221.1.1.112 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ULD_3 0.58 43.0 3.49e-01 82.1% 91.3%
5036301 375.1.1.37 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TF_Zn_Ribbon 0.57 39.0 4.41e-01 73.2% 100.0%
5041570 3859.1.1.0 ↗ alpha arrays › uncharacterized protein BT_1490 C-terminal domain › uncharacterized protein BT_1490 C-terminal domain › uncharacterized protein BT_1490 C-terminal domain 0.57 43.0 3.39e-01 83.9% 72.0%
4026487 2.1.1.39 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RNA_pol_Rbc25 0.57 43.0 3.45e-01 82.1% 78.2%
3790902 109.4.1.559 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Tuberin 0.56 46.0 3.07e-01 91.1% 54.7%
4936682 243.6.1.8 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › AF_0587-like_pre-PUA 0.56 40.0 3.55e-01 76.8% 81.2%
4226766 3894.1.1.3 ↗ beta meanders › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › GtfB_M 0.55 40.0 3.17e-01 80.4% 56.2%
3837944 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.55 47.0 3.73e-01 94.6% 60.0%
3699391 2484.1.1.1 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 0.55 45.0 2.67e-01 100.0% 14.4%
5051446 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.55 45.0 3.48e-01 96.4% 57.9%
3402422 221.1.1.112 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ULD_3 0.55 40.0 3.33e-01 82.1% 93.6%
4012132 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.53 45.0 3.51e-01 92.9% 90.8%
4945288 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 34.0 3.67e-01 94.6% 83.7%
3598119 330.3.1.0 ↗ a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like 0.53 36.0 3.43e-01 73.2% 61.4%
3483861 331.1.1.5 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › OGG_N 0.53 39.0 3.56e-01 82.1% 86.3%
3273657 2.1.1.39 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RNA_pol_Rbc25 0.52 42.0 3.24e-01 92.9% 92.1%
3506791 2.1.1.69 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RMI2 0.52 43.0 3.24e-01 94.6% 73.8%
3168082 2003.1.10.6 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › PreATP-grasp domain › GSH_synthase 0.52 43.0 3.41e-01 92.9% 47.0%
3455391 2004.1.1.51 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Sulfotransfer_1 0.51 43.0 3.21e-01 98.2% 76.5%
5044036 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.51 42.0 3.29e-01 98.2% 65.9%
3791839 4184.1.1.2 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b 0.51 35.0 3.22e-01 75.0% 78.8%
1408245 2003.1.10.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › PreATP-grasp domain 0.51 41.0 3.35e-01 92.9% 47.8%
4379527 101.1.2.70 ↗ alpha arrays › HTH › HTH › winged helix domain › PqqD 0.50 39.0 3.40e-01 83.9% 84.7%
1678740 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.50 36.0 3.37e-01 82.1% 92.3%
3415669 6.1.1.4 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › Ricin_B_lectin 0.50 41.0 3.22e-01 92.9% 64.0%