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NC_073073.1__YP_010741553.1__P9620_gp01__00001

Bact-Vir

NC_073073.1__YP_010741553.1__P9620_gp01__00001

Identity

Accession:
NC_073073 ↗
Kingdom:
phage

Quality

92.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Dhillonvirus› Escherichia_phage_mckay

TaxID: 2696416

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-59
PDB
Domain cluster: representative
CATH (28)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ewfA02 1.20.1270.310 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.72 63.0 5.74e-01 100.0% 86.4%
1kblA05 1.20.80.30 Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › 0.71 61.0 5.42e-01 100.0% 85.4%
1lq7A00 1.20.1270.70 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Designed single chain three-helix bundle 0.69 59.0 5.70e-01 98.3% 92.5%
4l8iB00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.67 47.0 3.81e-01 74.6% 44.6%
4kb2A01 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.66 47.0 3.81e-01 74.6% 41.3%
2ah5A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.65 50.0 4.86e-01 83.1% 96.9%
4oydB00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.65 46.0 3.65e-01 74.6% 41.0%
2gsvA00 6.10.140.40 Special › Helix non-globular › Helix Hairpins › 0.65 44.0 4.24e-01 72.9% 62.7%
5jazA03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.64 53.0 4.65e-01 100.0% 61.5%
3qa8A04 1.20.1270.250 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.63 53.0 3.64e-01 100.0% 71.7%
2r6iA02 1.10.3580.10 Mainly Alpha › Orthogonal Bundle › ATP12-like fold › ATP12 ATPase 0.62 51.0 3.83e-01 100.0% 64.5%
4n4pD00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.62 49.0 3.17e-01 88.1% 88.9%
2w02B01 1.10.150.640 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › AcsD, thumb domain, helical bundle 0.62 43.0 4.04e-01 72.9% 89.2%
3a06B03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.62 51.0 4.55e-01 100.0% 63.6%
3cz6A01 1.20.120.1480 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.61 41.0 3.43e-01 71.2% 62.5%
3d36B02 1.10.287.130 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain 0.60 41.0 4.13e-01 74.6% 70.5%
1j1jA02 1.20.58.200 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 0.59 40.0 3.57e-01 72.9% 49.4%
3dkqA02 4.10.860.20 Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › Rabenosyn, Rab binding domain 0.58 41.0 4.44e-01 76.3% 95.7%
1a7eA00 1.20.120.50 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hemerythrin-like 0.58 47.0 3.96e-01 100.0% 89.0%
3buxB01 1.20.930.20 Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › Adaptor protein Cbl, N-terminal domain 0.57 49.0 3.90e-01 100.0% 65.9%
1ewrA02 1.10.1420.10 Mainly Alpha › Orthogonal Bundle › MutS, DNA mismatch repair protein; Chain A, domain 3 › 0.57 44.0 3.54e-01 84.7% 59.7%
4pl0A02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.56 46.0 3.17e-01 100.0% 27.9%
5cdhG00 3.40.50.1240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like 0.55 45.0 2.89e-01 96.6% 65.2%
5l3wA01 1.20.120.140 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain 0.54 43.0 3.90e-01 91.5% 63.1%
3jvoA00 1.10.3230.30 Mainly Alpha › Orthogonal Bundle › Hypothetical protein yqbg › Phage gp6-like head-tail connector protein 0.53 45.0 3.89e-01 96.6% 68.8%
2z3xA00 6.10.10.80 Special › Helix non-globular › Helicase, Ruva Protein; domain 3 › Small, acid-soluble spore protein, alpha/beta type-like 0.52 38.0 3.90e-01 88.1% 91.1%
4dkcB00 1.20.1250.80 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › Interleukin-34 0.51 43.0 3.24e-01 100.0% 45.0%
1rp3A01 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.50 39.0 3.61e-01 93.2% 71.8%
ECOD (30)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4991809 206.1.3.3 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › PPDK_N 0.72 64.0 3.82e-01 100.0% 15.1%
3711337 632.24.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › GBS CAMP factor C-terminal domain › GBS CAMP factor C-terminal domain 0.70 61.0 5.93e-01 100.0% 98.5%
3585028 632.1.1.3 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain › Alpha-mann_mid 0.70 60.0 5.06e-01 98.3% 75.0%
4975876 206.1.3.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.70 60.0 3.69e-01 100.0% 20.5%
3823991 632.7.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain 0.70 61.0 5.09e-01 100.0% 67.6%
4947665 223.2.1.58 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Arf 0.69 56.0 4.45e-01 89.8% 86.7%
5028668 206.1.3.3 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › PPDK_N 0.68 59.0 3.62e-01 100.0% 20.3%
4010451 3788.1.1.15 ↗ alpha bundles › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) › PF27202 0.67 59.0 5.48e-01 100.0% 80.0%
4591251 632.7.1.1 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › HSP70 0.66 56.0 5.06e-01 100.0% 77.6%
3224304 4120.1.1.30 ↗ few secondary structure elements › Tim10/DDP › Tim10/DDP › Tim10/DDP › DUF842 0.65 51.0 4.57e-01 88.1% 82.4%
5008556 3843.1.1.0 ↗ alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K 0.65 45.0 4.03e-01 74.6% 51.8%
4934784 632.22.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.62 53.0 4.77e-01 100.0% 84.7%
4189620 102.2.1.0 ↗ alpha arrays › HhH/H2TH › H2TH › H2TH 0.62 53.0 4.85e-01 100.0% 85.0%
3484909 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.61 43.0 3.39e-01 72.9% 68.3%
4644501 3090.1.1.2 ↗ few secondary structure elements › Microplusin › Microplusin › Microplusin › PF30034 0.61 52.0 4.89e-01 100.0% 93.3%
3391940 650.1.1.1 ↗ alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.60 42.0 3.92e-01 72.9% 58.7%
4254733 2004.1.1.5 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.59 48.0 3.38e-01 98.3% 29.3%
4643003 605.1.1.108 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › GrpE 0.59 41.0 4.17e-01 74.6% 76.7%
4014169 5076.1.1.0 ↗ alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier 0.58 44.0 2.78e-01 81.4% 99.7%
4423640 5059.1.1.5 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › UAA 0.58 40.0 2.51e-01 74.6% 12.7%
3813837 622.4.1.0 ↗ alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related 0.57 40.0 3.77e-01 74.6% 94.7%
5068278 181.1.1.1 ↗ alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N 0.57 47.0 3.98e-01 96.6% 86.7%
3169408 101.1.17.2 ↗ alpha arrays › HTH › HTH › FF domain › FF 0.57 40.0 3.86e-01 76.3% 64.3%
3308343 1008.1.1.27 ↗ alpha bundles › BRCC36 C-terminal helical domain › BRCC36 C-terminal helical domain › BRCC36 C-terminal helical domain › COPIIcoated_ERV 0.56 39.0 3.75e-01 78.0% 82.7%
3476837 148.1.1.0 ↗ alpha arrays › Histone-like › Histone-related › Histone 0.55 41.0 3.18e-01 79.7% 34.8%
4939373 7583.1.1.1 ↗ a/b three-layered sandwiches › Rossmann-like domain in AF1104-like proteins › Rossmann-like domain in AF1104-like proteins › Rossmann-like domain in AF1104-like proteins › ARMT1-like_dom 0.55 44.0 3.02e-01 88.1% 24.7%
4061383 3121.1.1.2 ↗ a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › POTRA_1 0.54 41.0 3.94e-01 86.4% 92.9%
4392340 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.53 38.0 3.75e-01 78.0% 78.5%
3686025 604.7.1.10 ↗ alpha bundles › Spectrin repeat-like › Tubulin chaperone cofactor A › Tubulin chaperone cofactor A › Tmemb_170 0.53 44.0 3.36e-01 98.3% 92.3%
4279523 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.51 40.0 2.81e-01 89.8% 44.1%