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NC_073075.1__YP_010741742.1__P9622_gp65__00065

Bact-Vir

NC_073075.1__YP_010741742.1__P9622_gp65__00065

Identity

Accession:
NC_073075 ↗
Kingdom:
phage

Quality

84.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Dhillonvirus› Escherichia_phage_ZCEC10

TaxID: 2894588

Cluster

View cluster (11 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 12-76
PDB
Domain cluster: rep: NC_015938.1__YP_004782441.1__SaPh711_gp066__00066__D27-90
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3goxA02 3.30.60.130 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.77 55.0 6.01e-01 80.0% 88.9%
1y02A01 1.10.720.140 Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › 0.72 43.0 4.06e-01 81.5% 50.0%
1zbdB00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.72 51.0 4.08e-01 80.0% 39.0%
8eb0A01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.67 51.0 4.57e-01 80.0% 93.0%
1wimA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.65 54.0 4.76e-01 90.8% 92.6%
3t7lA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.62 42.0 4.05e-01 73.8% 62.2%
1wevA01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.59 41.0 4.15e-01 70.8% 71.9%
4ie5A01 2.60.120.590 Mainly Beta › Sandwich › Jelly Rolls › Alpha-ketoglutarate-dependent dioxygenase AlkB-like 0.59 41.0 2.74e-01 73.8% 35.2%
3goxA03 3.40.1800.10 Alpha Beta › 3-Layer(aba) Sandwich › His-Me finger endonuclease fold › His-Me finger endonucleases 0.58 46.0 4.30e-01 86.2% 72.8%
7yuiB01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.57 46.0 4.16e-01 87.7% 95.5%
4ld6A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 42.0 3.54e-01 89.2% 72.6%
4y97D00 1.10.3200.20 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af0941 › DNA Polymerase alpha, zinc finger 0.53 38.0 2.77e-01 76.9% 33.1%
1vx7000 2.30.170.20 Mainly Beta › Roll › Ribosomal Protein L24e; Chain: T; › Ribosomal protein L24 0.53 34.0 3.48e-01 72.3% 67.7%
4pfyA02 3.90.76.10 Alpha Beta › Alpha-Beta Complex › Dipeptide-binding Protein; domain 1 › Dipeptide-binding Protein; Domain 1 0.51 39.0 3.18e-01 89.2% 76.9%
3floB00 1.10.3200.20 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af0941 › DNA Polymerase alpha, zinc finger 0.51 38.0 2.81e-01 81.5% 80.6%
ECOD (53)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3684391 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.84 56.0 4.95e-01 80.0% 50.0%
3326051 376.1.1.23 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 0.83 59.0 5.12e-01 89.2% 50.5%
3438467 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.83 56.0 4.93e-01 80.0% 50.0%
3498231 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.82 57.0 5.19e-01 87.7% 55.3%
3191135 376.1.1.94 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_IRF-2BP1_2 0.82 56.0 5.05e-01 80.0% 54.1%
3430765 376.1.1.20 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.81 61.0 5.18e-01 93.8% 51.0%
5042937 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.81 50.0 5.41e-01 76.9% 74.5%
1002459 378.1.1.13 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › His_Me_b4a2 0.79 54.0 6.01e-01 73.8% 88.5%
3745376 376.1.3.4 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE_2 0.72 48.0 4.58e-01 75.4% 60.0%
3466575 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.71 52.0 5.30e-01 78.5% 76.9%
3877617 376.1.1.37 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › SLX1_C 0.70 47.0 4.33e-01 76.9% 52.9%
3468455 376.1.3.16 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › ADD_ATRX 0.70 42.0 5.07e-01 73.8% 100.0%
3301048 376.1.1.19 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › RINGv 0.69 42.0 5.05e-01 70.8% 100.0%
4023525 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.68 52.0 4.56e-01 100.0% 54.0%
3705738 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.68 48.0 5.02e-01 83.1% 81.7%
3066048 376.1.1.20 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.68 45.0 4.02e-01 81.5% 48.4%
3720327 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.67 54.0 4.63e-01 86.2% 85.0%
4015661 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.67 54.0 4.55e-01 86.2% 81.0%
3734069 376.1.1.20 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.67 48.0 4.30e-01 95.4% 52.6%
3380766 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.67 59.0 5.05e-01 95.4% 87.0%
None — 0.66 47.0 2.80e-01 76.9% 11.6%
3849360 376.1.3.23 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › RIM2a_ZnF 0.66 49.0 4.69e-01 78.5% 68.0%
3714738 377.1.1.6 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_L24e 0.66 37.0 3.01e-01 93.8% 29.2%
3624582 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.66 47.0 2.76e-01 76.9% 10.7%
4016556 376.1.3.31 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › zf-4CXXC_R1 0.65 47.0 3.98e-01 76.9% 72.7%
4966035 376.1.3.98 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › DUF7562 0.65 44.0 4.57e-01 70.8% 80.0%
3846283 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.63 42.0 4.57e-01 78.5% 88.0%
3230226 904.1.1.0 ↗ few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain 0.63 44.0 3.13e-01 73.8% 31.3%
3701012 376.1.3.3 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE 0.62 43.0 4.23e-01 72.3% 67.1%
3234939 376.1.3.3 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE 0.62 45.0 4.54e-01 80.0% 76.9%
3733728 376.1.3.31 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › zf-4CXXC_R1 0.61 45.0 4.24e-01 78.5% 93.8%
3217525 376.1.3.3 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE 0.61 41.0 3.69e-01 70.8% 51.1%
3578684 904.1.1.0 ↗ few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain 0.61 44.0 4.42e-01 75.4% 76.9%
3636589 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.60 47.0 4.29e-01 86.2% 88.9%
3703254 376.1.3.3 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE 0.60 47.0 4.45e-01 86.2% 70.0%
3599415 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.60 41.0 4.01e-01 70.8% 65.7%
3938379 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.60 42.0 4.25e-01 83.1% 75.4%
4998314 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.59 47.0 4.85e-01 93.8% 93.3%
3711261 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.59 40.0 4.28e-01 72.3% 81.8%
3286658 378.1.1.0 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.58 46.0 3.69e-01 86.2% 58.5%
3880702 109.3.1.241 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › FYVE 0.58 41.0 3.13e-01 78.5% 31.6%
3592936 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.57 39.0 3.82e-01 70.8% 65.7%
3274457 376.1.3.3 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE 0.57 40.0 2.55e-01 73.8% 14.9%
3703457 376.1.3.3 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE 0.56 39.0 3.80e-01 73.8% 64.0%
5061253 376.1.3.97 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › Prok-RING_2 0.56 45.0 4.26e-01 89.2% 78.8%
3714795 376.1.3.3 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE 0.56 43.0 3.82e-01 80.0% 65.6%
4946657 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.55 42.0 4.21e-01 81.5% 80.0%
3913312 377.1.1.50 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › ZMYM4 0.55 36.0 4.16e-01 73.8% 95.6%
3639010 301.1.1.0 ↗ a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like 0.55 40.0 2.81e-01 78.5% 30.7%
4546356 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.55 39.0 3.58e-01 100.0% 57.6%
3245490 377.11.1.1 ↗ few secondary structure elements › Glucocorticoid receptor-like › THAP domain › THAP domain › THAP 0.54 39.0 3.11e-01 78.5% 68.1%
5031996 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.51 37.0 4.03e-01 76.9% 100.0%
3611182 377.1.1.6 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_L24e 0.51 34.0 3.29e-01 72.3% 57.5%