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NC_073315.1__YP_010748963.1__QCF70_gp61__00061

Bact-Vir

Identity

Accession:: NC_073315 ↗
Kingdom:: phage

Quality

79.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Sarkviridae› Kagunavirus› Escherichia_phage_vB_EcoS_fFiEco03

TaxID: 2762427

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 137-208

PDB

Domain cluster: rep: MT584811.1__QLB38273.1__phiGT1_61__00061__D11-81

CATH (17)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2opcA00	2.60.40.2510	Mainly Beta › Sandwich › Immunoglobulin-like ›	0.58	43.0	3.71e-01	79.2%	98.3%
4f7kA03	2.60.40.420	Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins	0.58	41.0	3.58e-01	79.2%	47.4%
3g5wA02	2.60.40.420	Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins	0.58	42.0	3.28e-01	79.2%	34.4%
7ylrA01	2.40.30.10	Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors	0.57	40.0	3.59e-01	75.0%	100.0%
1vf7F01	2.40.30.170	Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain	0.56	38.0	3.48e-01	72.2%	100.0%
3jqwC00	2.60.120.380	Mainly Beta › Sandwich › Jelly Rolls ›	0.55	40.0	3.43e-01	79.2%	55.4%
5mj6A03	2.60.40.1910	Mainly Beta › Sandwich › Immunoglobulin-like ›	0.54	39.0	3.81e-01	77.8%	87.5%
1ah1A00	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.53	39.0	3.35e-01	81.9%	73.6%
4aycA02	3.30.40.10	Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger)	0.53	39.0	3.78e-01	80.6%	77.1%
6fxrA01	2.60.120.620	Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain	0.52	37.0	2.81e-01	79.2%	31.6%
3wo4B01	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.52	37.0	3.45e-01	77.8%	79.4%
2evrA02	3.90.1720.10	Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme)	0.52	37.0	3.06e-01	79.2%	51.4%
4h3wA01	2.60.290.20	Mainly Beta › Sandwich › Hypothetical Protein Tm1070; Chain: A › Protein of unknown function (DUF4621), C-terminal domain	0.51	38.0	3.28e-01	81.9%	72.8%
3cxeC01	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.51	37.0	3.44e-01	80.6%	83.7%
5z06A01	2.60.120.430	Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding lectin	0.51	37.0	2.94e-01	81.9%	56.1%
1yf2A03	3.90.220.20	Alpha Beta › Alpha-Beta Complex › Adenine-n6-DNA-methyltransferase TaqI; Chain A, domain 2 › DNA methylase specificity domains	0.51	36.0	3.00e-01	79.2%	72.1%
5owvD01	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.50	38.0	2.83e-01	86.1%	78.8%

ECOD (9)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3611129	10.32.1.4 ↗	beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L	0.61	45.0	3.91e-01	79.2%	94.5%
3224349	10.2.1.0 ↗	beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins)	0.58	41.0	3.85e-01	77.8%	88.4%
4572309	1.1.7.0 ↗	beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C	0.56	39.0	3.28e-01	73.6%	83.8%
4977038	11.1.1.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like	0.55	39.0	3.54e-01	75.0%	71.0%
3990561	11.1.1.955 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Fn3_Dep-1_4th	0.52	36.0	3.25e-01	72.2%	80.0%
5012981	11.1.1.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like	0.52	38.0	3.62e-01	77.8%	85.9%
3534048	11.1.1.179 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3	0.50	37.0	3.22e-01	80.6%	76.7%
5045937	1.1.7.7 ↗	beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6	0.50	43.0	3.96e-01	100.0%	98.0%
3862659	11.1.1.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like	0.50	37.0	3.28e-01	83.3%	76.7%

D2 medium residues 16-112

PDB

Domain cluster: representative

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3176538	4177.1.1.5 ↗	alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › Vps5	0.68	54.0	4.00e-01	96.9%	34.5%
3239318	601.33.1.19 ↗	alpha bundles › Four-helical up-and-down bundle › CHAD domain › CHAD domain › Transmemb_17	0.68	49.0	4.51e-01	76.3%	77.7%