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NC_073317.1__YP_010749072.1__QCF72_gp16__00016

Bact-Vir

NC_073317.1__YP_010749072.1__QCF72_gp16__00016

Identity

Accession:
NC_073317 ↗
Kingdom:
phage

Quality

83.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Sarkviridae› Kagunavirus› Escherichia_phage_vB_EcoS_fPoEco01

TaxID: 2762429

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-119
PDB
Domain cluster: representative
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2pp6A02 2.40.10.210 Mainly Beta › Beta Barrel › Thrombin, subunit H › Phage tail proteins (gpFII-like) 0.82 44.0 6.02e-01 83.6% 98.4%
2kz4A00 2.40.10.270 Mainly Beta › Beta Barrel › Thrombin, subunit H › Bacteriophage SPP1 head-tail adaptor protein 0.78 69.0 7.04e-01 92.2% 95.5%
3qzqA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.74 42.0 5.24e-01 85.3% 94.2%
3gs9A01 6.20.110.10 Special › Other non-globular › Thrombin, subunit H › 0.68 46.0 5.40e-01 83.6% 100.0%
6toaE01 2.40.10.270 Mainly Beta › Beta Barrel › Thrombin, subunit H › Bacteriophage SPP1 head-tail adaptor protein 0.67 52.0 5.67e-01 81.9% 100.0%
3f3bA00 2.40.10.370 Mainly Beta › Beta Barrel › Thrombin, subunit H › Protein of unknown function DUF3599 0.64 54.0 5.45e-01 88.8% 94.8%
2kvoA01 2.40.30.220 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Photosystem II Psb28 0.63 46.0 4.84e-01 83.6% 84.6%
1t7vA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 36.0 4.06e-01 97.4% 74.4%
2kcaA00 2.40.10.270 Mainly Beta › Beta Barrel › Thrombin, subunit H › Bacteriophage SPP1 head-tail adaptor protein 0.61 49.0 5.02e-01 87.9% 91.7%
2l1tA00 2.30.110.70 Mainly Beta › Roll › Pnp Oxidase; Chain A › 0.60 41.0 4.26e-01 86.2% 75.2%
1blxA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.58 40.0 4.43e-01 86.2% 88.0%
5ejlA02 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.58 45.0 4.42e-01 89.7% 75.8%
5wl1A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 35.0 3.71e-01 97.4% 68.3%
2w59A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 35.0 3.76e-01 94.0% 70.0%
3g2fA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.57 36.0 4.10e-01 86.2% 83.9%
4uhvA01 2.30.110.50 Mainly Beta › Roll › Pnp Oxidase; Chain A › 0.57 43.0 3.62e-01 87.1% 47.2%
3pg1A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.54 38.0 3.70e-01 86.2% 65.9%
1y12B00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.52 42.0 3.81e-01 87.1% 80.8%
1golA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.51 40.0 3.87e-01 90.5% 74.2%
4ci2B02 2.30.130.40 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like 0.50 38.0 3.70e-01 78.4% 72.8%
ECOD (37)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3502329 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.84 58.0 6.53e-01 70.7% 100.0%
119252 1.1.13.3 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_H_T_join 0.78 69.0 7.04e-01 92.2% 95.5%
4669352 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.78 67.0 6.88e-01 99.1% 96.4%
4034130 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.77 62.0 6.67e-01 88.8% 98.0%
5003311 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.76 62.0 6.42e-01 86.2% 99.1%
3975275 1.1.13.15 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Gifsy-2 0.74 55.0 6.07e-01 100.0% 94.7%
4988096 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.74 62.0 6.33e-01 88.8% 98.2%
5038876 1.1.13.2 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_attach 0.72 54.0 6.16e-01 85.3% 100.0%
4032900 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.72 61.0 6.41e-01 88.8% 99.0%
3943285 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.72 58.0 6.05e-01 85.3% 98.2%
4032883 1.1.13.3 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_H_T_join 0.69 59.0 6.15e-01 89.7% 99.0%
4031786 1.1.13.20 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Prophage_tailD1 0.69 49.0 5.70e-01 81.9% 100.0%
185291 1.1.13.20 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Prophage_tailD1 0.69 46.0 5.48e-01 84.5% 100.0%
4883825 1.1.13.20 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Prophage_tailD1 0.69 50.0 5.61e-01 84.5% 95.7%
3744064 1.1.7.25 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › AARP2CN 0.68 40.0 4.48e-01 81.9% 74.4%
3963092 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.67 45.0 4.96e-01 89.7% 84.2%
4879695 1.1.13.29 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › E217_gp28 0.66 61.0 5.84e-01 100.0% 89.4%
2642578 1.1.13.3 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_H_T_join 0.66 57.0 5.90e-01 93.1% 97.3%
3789214 1.1.7.25 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › AARP2CN 0.66 43.0 4.56e-01 81.9% 74.3%
3760665 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.65 46.0 3.48e-01 86.2% 32.7%
169594 1.1.13.14 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › DUF3599 0.64 54.0 5.45e-01 88.8% 94.8%
5022644 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.64 40.0 4.39e-01 98.3% 76.8%
4259247 1.11.1.1 ↗ beta barrels › cradle loop barrel › Photosystem II accessory factor Psb28 › Photosystem II accessory factor Psb28 › Psb28 0.62 44.0 4.67e-01 83.6% 84.8%
3649347 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.62 49.0 4.55e-01 87.1% 67.6%
119197 1.1.13.3 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_H_T_join 0.61 49.0 5.02e-01 87.9% 91.7%
4260208 1.1.13.62 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › PF27197 0.60 47.0 4.92e-01 81.9% 100.0%
3647453 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.60 43.0 3.37e-01 86.2% 33.8%
4373808 1.11.1.1 ↗ beta barrels › cradle loop barrel › Photosystem II accessory factor Psb28 › Photosystem II accessory factor Psb28 › Psb28 0.60 44.0 4.58e-01 83.6% 81.8%
3783835 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.57 45.0 3.51e-01 86.2% 44.2%
3409540 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.55 46.0 3.57e-01 87.9% 89.4%
3942090 1.1.5.77 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_tube 0.55 45.0 3.97e-01 87.1% 76.4%
3993931 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.54 43.0 3.39e-01 85.3% 46.4%
3397468 11.1.1.822 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF229 0.54 30.0 3.20e-01 70.7% 60.0%
3843200 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.53 44.0 3.44e-01 91.4% 84.9%
4054495 11.1.1.96 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C1-set 0.53 33.0 3.51e-01 100.0% 71.0%
2060704 1.1.5.13 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Peptidase_S6 0.51 41.0 3.19e-01 86.2% 43.2%
3200725 10.32.1.252 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › DUF7371 0.50 32.0 2.73e-01 71.6% 36.3%
D2 high residues 126-249
PDB
Domain cluster: rep: OP918135.1__WAP91181.1__X__00007__D1-157
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2zy2A01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.59 38.0 3.56e-01 98.4% 51.6%
6julA02 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.58 43.0 4.70e-01 79.0% 100.0%
4q7aC02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 40.0 4.21e-01 95.2% 84.3%
2a8eA00 3.30.930.20 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Protein of unknown function DUF1054 0.55 42.0 3.60e-01 81.5% 49.5%
1q5nA02 1.20.200.10 Mainly Alpha › Up-down Bundle › Fumarase C; Chain A, domain 2 › Fumarase/aspartase (Central domain) 0.55 43.0 3.40e-01 80.6% 90.5%
2felA00 1.20.200.10 Mainly Alpha › Up-down Bundle › Fumarase C; Chain A, domain 2 › Fumarase/aspartase (Central domain) 0.55 42.0 3.07e-01 80.6% 64.4%
2oqmB01 1.20.120.450 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain 0.54 44.0 4.01e-01 87.9% 97.6%
3gi8C00 1.20.1740.10 Mainly Alpha › Up-down Bundle › Amino acid/polyamine transporter I › Amino acid/polyamine transporter I 0.54 44.0 3.10e-01 89.5% 80.7%
3dkaB01 1.20.120.450 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain 0.53 45.0 4.41e-01 100.0% 87.4%
5llmA00 1.10.3860.10 Mainly Alpha › Orthogonal Bundle › Proton glutamate symport protein › Sodium:dicarboxylate symporter 0.52 44.0 3.14e-01 100.0% 29.1%
7ecrA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.51 37.0 3.30e-01 76.6% 66.1%
6oyfA01 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.50 43.0 3.99e-01 100.0% 73.8%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3342412 4070.1.1.1 ↗ alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like › Peptidase_M41 0.63 43.0 3.55e-01 93.5% 39.1%
3287599 620.1.1.5 ↗ alpha bundles › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › MDMPI_N 0.60 45.0 4.28e-01 77.4% 100.0%
5066954 7014.1.1.2 ↗ alpha bundles › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › TauE 0.59 48.0 3.91e-01 88.7% 82.7%
4222754 304.41.1.1 ↗ a+b two layers › Alpha-beta plaits › Glutamyl tRNA-reductase catalytic, N-terminal domain › Glutamyl tRNA-reductase catalytic, N-terminal domain › GlutR_N 0.59 32.0 3.07e-01 93.5% 42.7%
3799399 5050.1.1.4 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Nucleoside_tran 0.57 42.0 3.63e-01 75.0% 87.7%
3606304 633.1.1.0 ↗ alpha bundles › Bromodomain-like › Bromodomain › Bromodomain 0.57 48.0 4.51e-01 89.5% 96.7%
4646288 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.57 32.0 3.65e-01 85.5% 74.4%
3219539 633.23.1.14 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › Claudin_3 0.55 44.0 3.95e-01 85.5% 93.1%
3797423 3226.1.1.0 ↗ alpha complex topology › Uracil Transporter UraA › Uracil Transporter UraA › Uracil Transporter UraA 0.53 43.0 2.91e-01 87.1% 82.9%
3703271 192.18.1.4 ↗ alpha bundles › Long alpha-hairpin › MxiH-like › MxiH-like › Pex2_Pex12 0.53 36.0 3.20e-01 70.2% 89.2%
3661733 633.21.1.18 ↗ alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 › CASP_dom 0.52 43.0 3.91e-01 90.3% 88.8%
3935806 2006.1.6.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like 0.51 41.0 3.55e-01 87.1% 80.5%
3182290 174.1.1.4 ↗ few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › DUF4267 0.50 42.0 4.17e-01 91.1% 94.6%
4418109 302.1.1.1 ↗ a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.50 41.0 3.98e-01 90.3% 88.8%