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NC_073317.1__YP_010749090.1__QCF72_gp34__00034

Bact-Vir

NC_073317.1__YP_010749090.1__QCF72_gp34__00034

Identity

Accession:
NC_073317 ↗
Kingdom:
phage

Quality

78.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-56
PDB
Domain cluster: representative
CATH (66)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1v1cA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.74 65.0 5.88e-01 100.0% 91.2%
3lx7A01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.74 57.0 5.92e-01 100.0% 91.3%
6c6sD02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.72 61.0 5.77e-01 100.0% 80.0%
2ke9A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.72 64.0 5.78e-01 100.0% 91.0%
6zlvA01 2.40.10.350 Mainly Beta › Beta Barrel › Thrombin, subunit H › Rod shape-determining protein MreC, domain 2 0.71 54.0 4.67e-01 82.0% 98.7%
1tg0A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.71 62.0 5.70e-01 100.0% 89.4%
5ycqA00 2.30.30.390 Mainly Beta › Roll › SH3 type barrels. › Hemimethylated DNA-binding domain 0.70 58.0 5.13e-01 100.0% 62.3%
2egcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.70 61.0 5.37e-01 100.0% 76.0%
2ckkA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.70 61.0 6.04e-01 100.0% 94.3%
6gbuD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 60.0 5.58e-01 100.0% 92.2%
4fssB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 61.0 5.70e-01 100.0% 93.4%
2kdsA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.68 58.0 4.89e-01 100.0% 57.0%
3b79A00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.68 56.0 4.30e-01 100.0% 39.2%
2wweA01 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.66 51.0 4.07e-01 86.0% 76.9%
1yn8A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 57.0 5.45e-01 100.0% 94.9%
5zwzA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 56.0 5.08e-01 98.0% 80.0%
3pieB05 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.66 56.0 5.25e-01 100.0% 84.4%
1wfwA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 57.0 5.08e-01 100.0% 81.1%
1gutA00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.66 49.0 4.49e-01 84.0% 61.2%
3vsfA02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.66 53.0 3.89e-01 92.0% 65.7%
2fpeA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 56.0 5.28e-01 100.0% 90.3%
2kymA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 55.0 4.58e-01 100.0% 62.4%
1zuyA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 54.0 5.20e-01 100.0% 98.3%
2lc4A00 2.30.30.830 Mainly Beta › Roll › SH3 type barrels. › 0.63 50.0 3.91e-01 88.0% 64.9%
2leqA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.63 45.0 3.30e-01 78.0% 35.6%
2m89A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.63 50.0 3.77e-01 92.0% 61.9%
2p4tA00 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.63 54.0 5.18e-01 100.0% 87.9%
2dfkC02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 52.0 3.88e-01 100.0% 59.6%
3cm1A00 2.30.31.20 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Sporulation-specific cell division protein SsgB 0.62 51.0 3.89e-01 100.0% 71.3%
4innA00 2.40.128.520 Mainly Beta › Beta Barrel › Lipocalin › 0.62 47.0 3.46e-01 84.0% 38.4%
2w9jA00 3.30.720.10 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 0.62 46.0 4.24e-01 86.0% 73.2%
2xklA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.62 50.0 3.76e-01 100.0% 56.4%
1nqnA00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.61 51.0 4.03e-01 100.0% 93.2%
3oblA00 2.40.128.450 Mainly Beta › Beta Barrel › Lipocalin › 0.61 49.0 3.79e-01 96.0% 52.3%
6j8yA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.60 44.0 2.87e-01 82.0% 45.1%
1aqbA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.60 49.0 3.53e-01 100.0% 64.0%
2peeB02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.60 49.0 3.64e-01 92.0% 70.2%
2lg1A02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 47.0 3.72e-01 92.0% 67.0%
1ci3M02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.59 46.0 4.46e-01 90.0% 94.8%
5jk0B01 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.59 46.0 3.29e-01 92.0% 34.7%
1uwyA02 2.60.40.1120 Mainly Beta › Sandwich › Immunoglobulin-like › Carboxypeptidase-like, regulatory domain 0.58 46.0 3.82e-01 90.0% 78.4%
2p1jA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.58 42.0 3.20e-01 82.0% 79.0%
5yjwA00 3.50.50.100 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › 0.58 51.0 2.98e-01 100.0% 23.1%
4fpwB00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.58 47.0 3.33e-01 92.0% 46.6%
3v5qB01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.57 42.0 3.65e-01 84.0% 89.7%
2c4iA01 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.57 46.0 3.71e-01 100.0% 85.6%
1gd5A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.57 41.0 3.24e-01 84.0% 73.8%
2ix2B00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.57 41.0 2.75e-01 84.0% 44.9%
2qzuA02 3.30.1120.10 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.56 39.0 3.41e-01 76.0% 98.8%
1bqnA05 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.56 40.0 3.09e-01 82.0% 48.1%
1lomA00 2.30.60.10 Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N 0.55 40.0 3.33e-01 82.0% 61.4%
2aujD03 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.55 42.0 4.06e-01 90.0% 88.7%
2gu3A01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 41.0 3.89e-01 88.0% 83.1%
2jhnA01 3.30.310.20 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › DNA-3-methyladenine glycosylase AlkA, N-terminal domain 0.54 38.0 3.04e-01 76.0% 77.9%
1ykdB02 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.54 44.0 3.14e-01 100.0% 50.3%
2hc5A01 3.30.160.170 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › FlaG-like 0.54 43.0 3.64e-01 98.0% 55.1%
1attA01 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.54 42.0 3.21e-01 92.0% 75.7%
2y1sA00 2.30.60.10 Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N 0.53 43.0 3.44e-01 94.0% 91.7%
2nwvA00 3.30.310.110 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › XisI-like 0.53 41.0 3.34e-01 92.0% 54.5%
1ddvA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 38.0 3.29e-01 90.0% 95.2%
1knmA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.53 42.0 3.29e-01 100.0% 97.7%
2o62A01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 43.0 3.32e-01 100.0% 65.6%
1vwxH02 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.52 42.0 3.46e-01 98.0% 86.4%
1mtpA02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.51 39.0 3.31e-01 86.0% 83.5%
1qmoE01 2.60.40.4220 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 36.0 3.22e-01 80.0% 88.1%
2ix2A01 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.51 42.0 2.82e-01 100.0% 94.1%
ECOD (65)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3264806 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.80 63.0 6.37e-01 98.0% 86.0%
3910727 4.1.1.353 beta barrels › SH3 › SH3 › SH3 › SH3_TNRC18 0.80 72.0 6.55e-01 100.0% 80.0%
4034057 219.1.1.28 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP 0.79 70.0 5.46e-01 100.0% 50.5%
3583485 4.1.1.34 beta barrels › SH3 › SH3 › SH3 › MBT 0.78 70.0 5.43e-01 100.0% 51.4%
3624525 4.1.1.34 beta barrels › SH3 › SH3 › SH3 › MBT 0.78 70.0 4.68e-01 100.0% 30.0%
4116754 4.1.1.175 beta barrels › SH3 › SH3 › SH3 › MSSS 0.77 58.0 6.05e-01 100.0% 91.1%
4516378 4.1.1.175 beta barrels › SH3 › SH3 › SH3 › MSSS 0.76 57.0 5.11e-01 100.0% 58.6%
3866571 4.1.1.34 beta barrels › SH3 › SH3 › SH3 › MBT 0.75 67.0 3.85e-01 100.0% 11.7%
4028659 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.75 64.0 5.57e-01 100.0% 77.5%
4665407 4.1.1.175 beta barrels › SH3 › SH3 › SH3 › MSSS 0.74 55.0 5.58e-01 100.0% 82.0%
3347851 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.74 59.0 5.29e-01 100.0% 62.9%
3501312 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 64.0 5.89e-01 100.0% 86.2%
3879132 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.73 64.0 5.59e-01 100.0% 81.3%
3561094 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.72 63.0 5.56e-01 100.0% 81.3%
3482680 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.72 64.0 5.85e-01 100.0% 90.8%
3252839 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.72 64.0 5.57e-01 100.0% 80.0%
3566631 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.72 64.0 5.47e-01 100.0% 73.8%
3482646 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.72 63.0 4.21e-01 100.0% 29.5%
3171604 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.72 63.0 5.51e-01 100.0% 86.7%
4218488 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.72 64.0 5.44e-01 100.0% 73.8%
3479042 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 63.0 5.64e-01 100.0% 84.3%
3254408 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 62.0 5.74e-01 100.0% 89.2%
515 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.71 61.0 5.06e-01 100.0% 98.9%
3631298 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.71 63.0 5.49e-01 100.0% 78.7%
3210707 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.71 62.0 5.91e-01 100.0% 98.3%
3787441 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.70 62.0 5.11e-01 100.0% 65.6%
3607307 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.70 60.0 5.43e-01 100.0% 87.1%
3926207 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 59.0 5.89e-01 100.0% 94.3%
4000858 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.69 61.0 5.44e-01 100.0% 87.1%
3784140 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 60.0 5.85e-01 100.0% 92.7%
3512419 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.69 60.0 5.06e-01 100.0% 68.2%
3684646 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 58.0 5.01e-01 100.0% 60.0%
3170649 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.68 59.0 5.03e-01 100.0% 84.7%
3623785 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.68 59.0 5.24e-01 100.0% 78.7%
3411042 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.68 62.0 5.85e-01 100.0% 95.0%
3227565 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.68 56.0 5.39e-01 96.0% 95.0%
3225974 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.68 53.0 4.46e-01 88.0% 90.0%
5008207 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.67 57.0 4.93e-01 98.0% 85.0%
3176049 4.1.1.51 beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.66 57.0 5.22e-01 100.0% 72.5%
5018537 5090.1.1.0 beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains 0.66 56.0 4.52e-01 98.0% 83.0%
136506 4075.1.1.2 a+b complex topology › RGC domain › RGC domain › RGC domain › PF29130 0.64 55.0 4.51e-01 100.0% 89.9%
4091216 3844.2.1.2 a+b two layers › hydrogenase expression protein-like › MybT EspG5 chaperone › MybT EspG5 chaperone › DUF5081 0.64 55.0 3.69e-01 100.0% 63.9%
5078248 2.4.1.1 beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.64 48.0 4.37e-01 86.0% 60.0%
3930399 4075.1.1.0 a+b complex topology › RGC domain › RGC domain › RGC domain 0.63 52.0 4.29e-01 100.0% 92.9%
3236360 389.1.1.0 few secondary structure elements › EGF-like › EGF-related › EGF/Laminin 0.62 46.0 4.04e-01 82.0% 91.3%
3228340 4075.1.1.2 a+b complex topology › RGC domain › RGC domain › RGC domain › PF29130 0.62 51.0 4.26e-01 100.0% 94.0%
3889496 389.1.3.0 few secondary structure elements › EGF-like › EGF-related › TNF receptor-like 0.61 45.0 4.01e-01 80.0% 86.7%
3638957 3561.1.1.1 a+b complex topology › Mediator of RNA polymerase II transcription subunit 17 › Mediator of RNA polymerase II transcription subunit 17 › Mediator of RNA polymerase II transcription subunit 17 › Med17 0.61 45.0 2.59e-01 82.0% 7.5%
3716707 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.60 46.0 3.16e-01 84.0% 48.9%
3882464 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.60 44.0 3.90e-01 80.0% 62.7%
4972785 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.60 45.0 4.55e-01 82.0% 89.8%
3414142 109.27.1.0 alpha superhelices › Repetitive alpha hairpins › BACK domain › BACK domain 0.60 41.0 2.97e-01 74.0% 27.3%
4882410 568.1.1.25 few secondary structure elements › p8-MTCP1-related › p8-MTCP1-related › p8-MTCP1-related › NDUFA12 0.59 45.0 3.58e-01 84.0% 67.3%
4977860 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.59 49.0 2.95e-01 100.0% 91.0%
3898522 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.58 43.0 4.32e-01 82.0% 84.0%
3709821 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 44.0 3.60e-01 100.0% 75.2%
3302660 109.4.1.1256 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3 0.57 40.0 2.74e-01 80.0% 23.6%
4975450 300.1.1.0 a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease 0.56 39.0 3.14e-01 78.0% 33.9%
5022543 2002.1.1.36 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Pterin_bind 0.55 47.0 2.70e-01 98.0% 10.5%
4945471 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.55 42.0 4.07e-01 100.0% 90.8%
3411613 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 41.0 2.58e-01 94.0% 26.2%
3251953 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.53 38.0 3.95e-01 80.0% 91.1%
4957722 71.1.1.0 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.53 43.0 3.29e-01 100.0% 78.3%
853 9.1.1.23 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › DUF3598_N 0.52 43.0 3.31e-01 100.0% 65.2%
3404272 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.50 41.0 3.03e-01 100.0% 58.1%