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NC_073318.1__YP_010749151.1__QCF73_gp18__00018

Bact-Vir

NC_073318.1__YP_010749151.1__QCF73_gp18__00018

Identity

Accession:
NC_073318 ↗
Kingdom:
phage

Quality

92.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Sarkviridae› Kagunavirus› Escherichia_phage_NTEC3

TaxID: 2885687

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-86
PDB
Domain cluster: representative
CATH (26)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4od8D00 6.10.140.1880 Special › Helix non-globular › Helix Hairpins › 0.83 41.0 5.06e-01 75.3% 76.5%
1z0pA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.77 49.0 5.20e-01 72.8% 72.6%
1a7eA00 1.20.120.50 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hemerythrin-like 0.72 50.0 4.40e-01 77.8% 50.0%
3ejbH02 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.68 55.0 3.86e-01 88.9% 87.4%
1yz5B00 1.20.190.20 Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › 14-3-3 domain 0.67 53.0 3.84e-01 85.2% 72.9%
1y6xA00 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.67 40.0 3.95e-01 85.2% 55.2%
4udsA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.66 55.0 4.23e-01 93.8% 73.2%
7xxiA01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.65 58.0 3.94e-01 98.8% 45.5%
2qr4A01 1.20.140.70 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Oligopeptidase f, N-terminal domain 0.65 48.0 3.84e-01 77.8% 67.3%
2fu2A00 1.20.1440.50 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Ta0600-like 0.65 39.0 3.97e-01 76.5% 61.5%
3lsjA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.65 47.0 3.81e-01 76.5% 56.9%
1dowA00 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.64 55.0 4.20e-01 98.8% 68.8%
4lxjA01 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.64 55.0 3.53e-01 96.3% 92.0%
1vcsA00 1.20.58.400 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › t-snare proteins 0.64 43.0 3.99e-01 92.6% 54.9%
6n7pX01 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.63 46.0 3.09e-01 76.5% 39.1%
1gnlA01 1.20.1270.20 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.63 46.0 3.85e-01 76.5% 79.1%
3wd6A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.63 46.0 4.05e-01 76.5% 73.7%
3rbtA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.63 46.0 4.02e-01 76.5% 73.5%
1sb7A02 3.30.2340.10 Alpha Beta › 2-Layer Sandwich › Pseudouridine synthase › TruD, insertion domain 0.63 48.0 4.03e-01 81.5% 98.5%
2p5tA00 1.10.8.130 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.62 43.0 4.15e-01 71.6% 100.0%
2hkuB00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.62 52.0 4.00e-01 92.6% 97.8%
3bujA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.60 49.0 3.24e-01 93.8% 77.6%
3rrcB01 1.20.1310.20 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Duffy-antigen binding domain 0.58 42.0 3.41e-01 77.8% 78.5%
4jcsA02 1.10.12.10 Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 0.52 34.0 3.68e-01 74.1% 85.5%
3b4qA00 1.10.1200.100 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › conserved protein domain from corynebacterium diphtheriae 0.52 35.0 3.50e-01 88.9% 65.5%
5k3hB04 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.51 45.0 3.89e-01 100.0% 92.5%
ECOD (40)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5006929 219.1.1.76 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF553 0.87 43.0 2.88e-01 75.3% 15.3%
4080313 310.2.1.0 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF 0.80 56.0 4.63e-01 72.8% 97.1%
3360875 7015.1.1.4 ↗ alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › PLAC8 0.79 58.0 5.11e-01 76.5% 54.8%
3821523 5069.1.3.122 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits › PLAC8 0.76 56.0 4.92e-01 76.5% 54.8%
3178266 373.1.1.0 ↗ few secondary structure elements › Zn2/Cys6 DNA-binding domain › Zn2/Cys6 DNA-binding domain › Zn2/Cys6 DNA-binding domain 0.75 54.0 3.80e-01 74.1% 36.0%
3736123 4121.1.1.0 ↗ a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like 0.71 52.0 3.54e-01 75.3% 30.6%
3222689 5054.1.1.61 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › ELO 0.71 56.0 3.96e-01 86.4% 73.2%
3997950 5069.1.3.56 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits › GOST_TM 0.71 55.0 5.31e-01 82.7% 74.4%
3422946 192.29.1.101 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › Rx_N 0.70 51.0 4.53e-01 81.5% 53.9%
2582657 601.2.1.1 ↗ alpha bundles › Four-helical up-and-down bundle › Cytochromes › Cytochromes › 7tm_1 0.70 53.0 4.62e-01 80.2% 57.5%
4986595 3843.1.1.0 ↗ alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K 0.69 53.0 5.00e-01 80.2% 68.4%
3591581 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.68 61.0 3.84e-01 98.8% 53.3%
3289317 191.1.1.41 ↗ alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › EthR_C 0.68 51.0 4.13e-01 79.0% 60.7%
5083098 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.68 50.0 4.63e-01 76.5% 69.0%
4592296 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.68 53.0 4.29e-01 82.7% 91.7%
3231996 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.67 49.0 4.32e-01 77.8% 68.3%
3946910 3755.1.1.0 ↗ alpha bundles › YscO-like › Putative type III secretion protein YscO-related › Putative type III secretion protein YscO-related 0.67 55.0 4.19e-01 90.1% 76.2%
4992024 5069.1.3.0 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits 0.66 50.0 4.40e-01 80.2% 64.2%
4576993 3843.1.1.1 ↗ alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › Oxidored_q2 0.66 49.0 4.79e-01 82.7% 71.1%
3194153 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.66 48.0 4.56e-01 76.5% 77.9%
5044572 310.2.1.0 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF 0.66 46.0 4.23e-01 72.8% 69.5%
3720032 5058.1.1.0 ↗ alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region 0.64 47.0 4.13e-01 77.8% 55.8%
3261693 601.37.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › Photosystem II lipoprotein Psb27 › Photosystem II lipoprotein Psb27 0.63 46.0 4.08e-01 77.8% 62.5%
3493322 2006.1.1.8 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › 5_nucleotid 0.63 41.0 2.89e-01 75.3% 21.3%
3327991 601.4.1.40 ↗ alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains › DUF2985 0.62 49.0 3.88e-01 84.0% 50.3%
3350676 5069.1.3.0 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits 0.62 47.0 3.64e-01 80.2% 47.4%
3412831 7015.1.1.0 ↗ alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain 0.62 45.0 3.73e-01 77.8% 56.7%
4176312 4006.1.1.1 ↗ alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF 0.61 48.0 4.53e-01 85.2% 77.0%
3586355 210.2.1.1 ↗ a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain › PP2C 0.61 51.0 3.41e-01 92.6% 46.3%
3961498 192.15.1.223 ↗ alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › DUF2694 0.61 40.0 4.41e-01 72.8% 83.1%
3503611 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.60 47.0 4.51e-01 84.0% 93.7%
3433915 109.4.1.148 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › EST1_DNA_bind,EST1 0.60 53.0 3.23e-01 100.0% 47.2%
4223425 4006.1.1.1 ↗ alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF 0.60 52.0 4.74e-01 93.8% 72.4%
3295267 633.4.1.1 ↗ alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor › PMEI 0.59 52.0 4.07e-01 98.8% 69.9%
3952797 245.2.1.3 ↗ a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › DUF2694 0.58 43.0 4.30e-01 80.2% 90.6%
4939310 5045.1.1.3 ↗ alpha bundles › F1F0 ATP synthase subunit A › F1F0 ATP synthase subunit A › F1F0 ATP synthase subunit A › V_ATPase_I 0.57 49.0 3.28e-01 95.1% 57.3%
3620604 148.1.1.0 ↗ alpha arrays › Histone-like › Histone-related › Histone 0.57 44.0 4.32e-01 80.2% 87.1%
4387552 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.56 43.0 4.25e-01 81.5% 81.2%
3280651 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.55 46.0 3.32e-01 90.1% 93.5%
2994519 148.1.1.0 ↗ alpha arrays › Histone-like › Histone-related › Histone 0.52 43.0 4.10e-01 88.9% 94.7%