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NC_073324.1__YP_010749663.1__QCF79_gp83__00083

Bact-Vir

NC_073324.1__YP_010749663.1__QCF79_gp83__00083

Identity

Accession:
NC_073324 ↗
Kingdom:
phage

Quality

90.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-52
PDB
Domain cluster: representative
CATH (45)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5vmzA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.73 53.0 5.88e-01 82.0% 100.0%
5mu3B00 3.40.50.12050 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.71 61.0 4.30e-01 100.0% 49.1%
2nn5A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.69 58.0 4.02e-01 96.0% 80.7%
3gxwC00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.66 54.0 4.36e-01 94.0% 90.0%
2xp1A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.64 51.0 4.30e-01 94.0% 85.3%
4w66B00 1.20.1050.130 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.63 49.0 3.20e-01 88.0% 19.1%
3noyB02 3.30.413.10 Alpha Beta › 2-Layer Sandwich › Sulfite Reductase Hemoprotein; domain 1 › Sulfite Reductase Hemoprotein, domain 1 0.63 53.0 4.28e-01 94.0% 73.7%
17gsA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.63 47.0 3.90e-01 86.0% 61.6%
3h5aD01 3.90.930.70 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.62 46.0 3.89e-01 84.0% 45.5%
1wj5A01 1.10.10.980 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › CST, Suppressor of Cdc13 homolog, complex subunit STN1, N-terminal domain 0.62 49.0 3.92e-01 100.0% 43.9%
3di5A00 1.20.120.450 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain 0.62 53.0 3.79e-01 98.0% 53.0%
1hnaA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.61 48.0 3.78e-01 88.0% 63.4%
1tu7A01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.61 47.0 3.89e-01 88.0% 61.6%
3qavA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.61 46.0 4.06e-01 86.0% 79.7%
6lpfA01 1.10.730.20 Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › 0.60 49.0 3.36e-01 92.0% 27.0%
1r5aA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.60 45.0 4.04e-01 86.0% 80.8%
5a4uA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.60 48.0 4.11e-01 92.0% 75.6%
4q5nA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.60 46.0 3.69e-01 86.0% 61.1%
3bbyA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.60 45.0 4.24e-01 86.0% 71.9%
4mpgA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.59 46.0 4.08e-01 92.0% 80.2%
5elaA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.59 46.0 3.99e-01 92.0% 69.3%
1ob8A00 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.59 45.0 3.50e-01 86.0% 90.8%
3lszA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.59 47.0 3.93e-01 92.0% 82.6%
4iw9B01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.59 46.0 3.78e-01 92.0% 65.7%
3uoxB01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.58 51.0 3.19e-01 100.0% 69.5%
4q5qB00 1.20.1050.130 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.58 43.0 3.04e-01 86.0% 36.7%
4hz4A01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.58 45.0 3.98e-01 94.0% 79.8%
1mkyA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.57 42.0 3.08e-01 82.0% 88.2%
2ycdA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.57 45.0 3.93e-01 92.0% 73.3%
3h1nB01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.57 44.0 3.47e-01 92.0% 54.1%
3n4rA00 3.90.1150.80 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.56 43.0 3.67e-01 90.0% 91.4%
1yqeA01 3.40.630.50 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › AF0625-like 0.56 43.0 2.96e-01 84.0% 95.7%
2oarB00 1.10.1200.120 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Large-conductance mechanosensitive channel, MscL; domain 1 0.55 46.0 3.53e-01 98.0% 47.2%
7xc2A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 42.0 3.30e-01 88.0% 38.7%
4bqnA02 1.10.10.2490 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.55 44.0 3.37e-01 90.0% 81.0%
2zvbA01 3.40.1010.10 Alpha Beta › 3-Layer(aba) Sandwich › Cobalt-precorrin-4 Transmethylase; domain 1 › Tetrapyrrole methylase, N-terminal domain 0.55 45.0 3.36e-01 92.0% 89.3%
3do9A01 3.40.1530.30 Alpha Beta › 3-Layer(aba) Sandwich › hypothetical protein tt1805 › Uncharacterised family UPF0302, N-terminal domain 0.55 42.0 3.33e-01 90.0% 53.3%
5kmpB00 3.50.50.100 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › 0.54 46.0 2.77e-01 98.0% 81.8%
4la1A01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.54 39.0 3.30e-01 84.0% 66.3%
3mhxB00 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.54 36.0 3.14e-01 70.0% 84.0%
1iv8A02 3.30.1590.10 Alpha Beta › 2-Layer Sandwich › Maltooligosyl trehalose synthase, domain 2 › Maltooligosyl trehalose synthase, domain 2 0.54 41.0 3.21e-01 86.0% 44.9%
1pg5B02 2.30.30.20 Mainly Beta › Roll › SH3 type barrels. › Aspartate carbamoyltransferase regulatory subunit, C-terminal domain 0.53 35.0 3.44e-01 70.0% 94.7%
6julA02 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.52 44.0 3.65e-01 100.0% 65.6%
3sfvB01 3.30.450.390 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.51 44.0 3.17e-01 96.0% 83.8%
2od0A00 3.30.1460.30 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › YgaC/TfoX-N like chaperone 0.51 40.0 3.20e-01 88.0% 94.2%
ECOD (69)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3923840 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.85 57.0 6.74e-01 70.0% 100.0%
3930224 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.84 69.0 6.96e-01 88.0% 88.0%
3934657 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.84 56.0 6.62e-01 70.0% 100.0%
3941038 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.82 70.0 7.08e-01 100.0% 94.0%
3938963 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.82 55.0 6.38e-01 72.0% 100.0%
3926380 386.1.1.251 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › DUF7381 0.82 55.0 6.33e-01 72.0% 100.0%
3936410 273.1.1.0 a+b three layers › PR-1-like › PR-1-like › PR-1-like 0.81 64.0 4.15e-01 88.0% 21.1%
3931930 273.1.1.0 a+b three layers › PR-1-like › PR-1-like › PR-1-like 0.79 64.0 4.03e-01 86.0% 19.3%
3930081 386.1.1.251 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › DUF7381 0.79 56.0 6.20e-01 82.0% 95.0%
3935416 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.78 59.0 5.72e-01 80.0% 72.7%
3927790 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.76 61.0 6.39e-01 86.0% 95.6%
3245518 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.75 58.0 3.64e-01 84.0% 27.1%
3941277 386.1.1.251 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › DUF7381 0.75 66.0 4.11e-01 98.0% 48.0%
4070661 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.73 43.0 3.99e-01 96.0% 44.6%
5027402 873.1.1.0 a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain 0.72 45.0 3.05e-01 88.0% 18.8%
3933871 386.1.1.251 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › DUF7381 0.72 51.0 4.56e-01 82.0% 54.3%
3933654 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.72 50.0 5.20e-01 74.0% 86.7%
3924908 386.1.1.251 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › DUF7381 0.71 53.0 4.17e-01 80.0% 76.0%
3931934 330.9.1.0 a+b two layers › dsRBD-like › C-terminal domain in LINE-1 ORF1p › C-terminal domain in LINE-1 ORF1p 0.70 60.0 5.53e-01 98.0% 93.8%
3938283 386.1.1.251 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › DUF7381 0.70 54.0 4.76e-01 90.0% 56.0%
4025195 4133.1.1.0 alpha arrays › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like 0.70 51.0 3.50e-01 92.0% 23.6%
3407190 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.69 54.0 4.87e-01 88.0% 87.1%
3930990 386.1.1.251 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › DUF7381 0.69 51.0 4.53e-01 88.0% 54.8%
3924728 386.1.1.251 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › DUF7381 0.69 53.0 4.65e-01 88.0% 56.0%
4946049 79.1.1.0 beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain 0.68 45.0 3.76e-01 98.0% 42.5%
3997077 2485.1.1.0 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.68 59.0 4.69e-01 100.0% 62.9%
4026024 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.67 53.0 5.47e-01 88.0% 97.8%
5030237 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.67 40.0 3.41e-01 80.0% 37.5%
3922598 4120.1.1.43 few secondary structure elements › Tim10/DDP › Tim10/DDP › Tim10/DDP › TSTD2_N 0.65 51.0 4.79e-01 90.0% 70.8%
3481722 214.1.1.0 a+b two layers › SH2 › SH2 › SH2 0.64 51.0 4.11e-01 92.0% 64.8%
4251998 296.1.1.3 a+b three layers › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › PF26540 0.64 52.0 4.29e-01 94.0% 80.0%
4345162 304.48.1.11 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RNA_pol 0.64 52.0 3.55e-01 90.0% 27.5%
3876302 101.1.2.206 alpha arrays › HTH › HTH › winged helix domain › SAMD1_WH 0.63 41.0 3.19e-01 84.0% 31.4%
4929483 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.63 55.0 4.08e-01 96.0% 59.2%
3239387 2485.1.1.0 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.62 46.0 3.14e-01 86.0% 29.5%
5048568 4294.1.1.2 few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like › Trm112p 0.62 49.0 3.32e-01 90.0% 25.9%
5061619 1075.1.1.3 alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › ABC2_membrane_2 0.61 55.0 3.38e-01 100.0% 40.7%
4325095 101.1.2.309 alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.61 49.0 3.24e-01 98.0% 20.9%
3592666 213.1.1.0 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.61 40.0 2.72e-01 90.0% 18.4%
3725907 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.61 47.0 4.33e-01 90.0% 73.9%
4527970 101.1.2.309 alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.61 49.0 3.28e-01 98.0% 22.5%
4992529 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 37.0 3.06e-01 80.0% 33.3%
3391564 64.1.1.0 beta meanders › WW domain-like › WW domain › WW domain 0.60 46.0 4.60e-01 88.0% 92.0%
4683209 2004.1.1.80 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Cytidylate_kin 0.60 48.0 3.23e-01 92.0% 91.4%
5038557 101.1.2.934 alpha arrays › HTH › HTH › winged helix domain › HVO_A0261_N 0.59 47.0 3.75e-01 88.0% 84.0%
3807145 376.1.2.16 few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1-like_CT 0.58 42.0 4.01e-01 84.0% 87.7%
5028765 601.7.1.0 alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.58 47.0 3.40e-01 94.0% 87.3%
4275162 2005.1.1.11 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ATP_bind_3 0.58 51.0 3.28e-01 100.0% 46.9%
5041715 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.58 49.0 3.83e-01 96.0% 55.5%
3664072 109.1.1.1 alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C › GST_C 0.57 45.0 3.02e-01 92.0% 26.2%
4254993 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.57 41.0 3.21e-01 76.0% 42.0%
4997639 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 49.0 3.78e-01 94.0% 67.6%
3667031 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.57 45.0 3.92e-01 86.0% 100.0%
3518548 2004.1.1.80 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Cytidylate_kin 0.56 45.0 3.17e-01 90.0% 58.6%
3197429 244.2.1.10 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › NDH2_C 0.56 50.0 3.08e-01 100.0% 56.8%
4238042 4354.1.1.1 a+b two layers › TRCF domain › TRCF domain › TRCF domain › TRCF 0.55 45.0 3.34e-01 98.0% 58.1%
5035255 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 46.0 3.70e-01 92.0% 77.9%
5046131 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.52 41.0 3.26e-01 86.0% 84.0%
4979123 2004.1.1.97 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MobB 0.52 41.0 2.91e-01 92.0% 84.4%
3214830 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 38.0 3.21e-01 84.0% 94.7%
3209881 109.4.1.207 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_2 0.51 39.0 2.20e-01 82.0% 7.0%
5021828 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.51 41.0 3.24e-01 86.0% 72.0%
4989431 2004.1.1.97 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MobB 0.51 42.0 2.90e-01 100.0% 82.3%
5010212 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.51 45.0 3.27e-01 98.0% 39.3%
4936682 243.6.1.8 a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › AF_0587-like_pre-PUA 0.51 39.0 3.44e-01 92.0% 71.8%
5019583 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.50 41.0 3.22e-01 88.0% 71.0%
5029366 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.50 40.0 3.34e-01 86.0% 57.6%
5069901 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.50 44.0 3.63e-01 100.0% 82.2%
4937434 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.50 39.0 3.02e-01 84.0% 47.3%