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NC_073336.1__YP_010750680.1__QCN41_gp48__00048

Bact-Vir

NC_073336.1__YP_010750680.1__QCN41_gp48__00048

Identity

Accession:
NC_073336 ↗
Kingdom:
phage

Quality

73.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Gordonvirus› Arthrobacter_phage_ScienceWizSam

TaxID: 2927283

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-57
PDB
Domain cluster: representative
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2gb5A01 3.90.79.20 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › 0.71 60.0 4.39e-01 98.0% 36.1%
2o0aA00 3.40.850.20 Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › 0.68 58.0 3.66e-01 98.0% 39.4%
1l1oC02 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.65 38.0 4.14e-01 74.5% 73.7%
1ej6A04 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.63 50.0 3.27e-01 88.2% 97.0%
4omfB02 3.10.450.750 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 41.0 4.29e-01 78.4% 83.0%
3s8iA00 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.57 49.0 3.65e-01 94.1% 92.7%
3u50C02 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.57 34.0 3.83e-01 78.4% 80.0%
1twfB08 3.90.1800.10 Alpha Beta › Alpha-Beta Complex › DCoH-like › RNA polymerase alpha subunit dimerisation domain 0.53 33.0 2.92e-01 78.4% 36.5%
2nutB02 2.30.30.380 Mainly Beta › Roll › SH3 type barrels. › Zn-finger domain of Sec23/24 0.53 35.0 3.37e-01 86.3% 56.5%
1m2vB03 2.30.30.380 Mainly Beta › Roll › SH3 type barrels. › Zn-finger domain of Sec23/24 0.53 35.0 3.38e-01 86.3% 58.1%
1jj2Y00 2.20.25.30 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.52 40.0 3.80e-01 100.0% 71.2%
ECOD (28)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1650067 375.1.1.60 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › PriA_CRR 0.71 40.0 4.72e-01 72.5% 90.3%
5043237 375.1.1.93 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › A2L_zn_ribbon 0.71 40.0 4.67e-01 72.5% 93.3%
3980811 375.1.1.60 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › PriA_CRR 0.68 41.0 3.89e-01 78.4% 51.7%
4398503 221.4.1.27 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › Zn_ribbon_NUD 0.67 55.0 4.16e-01 94.1% 38.3%
4056467 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.67 40.0 3.84e-01 78.4% 51.7%
3564885 375.1.1.44 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-NADH-PPase 0.66 39.0 4.67e-01 80.4% 100.0%
4981579 4294.1.1.0 ↗ few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like 0.65 38.0 4.15e-01 78.4% 72.5%
3992738 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.63 48.0 5.08e-01 88.2% 95.6%
3741416 375.1.1.42 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rep_fac-A_C 0.62 36.0 4.09e-01 78.4% 93.3%
4003736 3289.1.1.8 ↗ alpha complex topology › Nck-associated protein 1/Cytoplasmic FMR1-interacting protein 1 › Nck-associated protein 1/Cytoplasmic FMR1-interacting protein 1 › Nck-associated protein 1/Cytoplasmic FMR1-interacting protein 1 › Strumpellin 0.61 55.0 2.95e-01 100.0% 7.2%
4588738 2.1.1.7 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 0.61 44.0 3.80e-01 98.0% 47.1%
3832799 206.1.1.70 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, ABC1 0.60 46.0 2.84e-01 84.3% 15.5%
3974544 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.59 39.0 3.87e-01 86.3% 65.5%
3998556 7577.1.1.3 ↗ a/b three-layered sandwiches › PLP-dependent transferases › PLP-dependent transferases › PLP-dependent transferases › Aminotran_5 0.58 50.0 3.05e-01 100.0% 63.3%
4454089 2487.1.1.3 ↗ a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › Aconitase_C 0.58 47.0 3.31e-01 92.2% 47.3%
3856952 375.1.1.194 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF4503 0.56 34.0 3.74e-01 78.4% 77.5%
3783751 223.1.1.21 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › HODM_asu-like 0.56 49.0 3.00e-01 100.0% 29.4%
5054531 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.56 46.0 3.62e-01 88.2% 59.0%
4563102 331.2.1.1 ↗ a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM_PMM_IV 0.56 45.0 3.49e-01 94.1% 88.0%
3544109 2.1.1.133 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF4503 0.55 33.0 3.71e-01 72.5% 85.7%
3039309 2003.1.5.91 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Reovirus_L2_MT2 0.55 46.0 3.03e-01 94.1% 40.1%
5050250 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.54 35.0 3.74e-01 92.2% 94.3%
4026760 375.1.1.85 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Auto_anti-p27 0.54 38.0 3.97e-01 80.4% 88.9%
3419307 7512.1.1.0 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase 0.52 45.0 2.74e-01 92.2% 17.2%
3259235 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.52 31.0 3.50e-01 78.4% 93.3%
5000797 375.1.1.13 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Ribosomal_L37ae 0.52 42.0 3.74e-01 100.0% 62.7%
164160 4357.1.1.1 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.51 41.0 3.32e-01 92.2% 67.6%
3718169 130.1.2.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › ribosome-binding domain of Mdm38 0.50 42.0 2.64e-01 100.0% 44.2%