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NC_073336.1__YP_010750691.1__QCN41_gp59__00059

Bact-Vir

NC_073336.1__YP_010750691.1__QCN41_gp59__00059

Identity

Accession:
NC_073336 ↗
Kingdom:
phage

Quality

67.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Gordonvirus› Arthrobacter_phage_ScienceWizSam

TaxID: 2927283

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 11-62
PDB
D2 medium residues 63-128
PDB
Domain cluster: representative
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3g2bA00 1.10.10.1150 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Coenzyme PQQ synthesis protein D (PqqD) 0.67 32.0 2.86e-01 80.3% 33.3%
6c1qB02 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.58 47.0 3.08e-01 87.9% 74.2%
1wp1B01 1.20.1600.10 Mainly Alpha › Up-down Bundle › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) 0.58 50.0 3.05e-01 92.4% 59.8%
8jx6A02 2.30.30.780 Mainly Beta › Roll › SH3 type barrels. › 0.56 43.0 3.77e-01 89.4% 54.4%
5unhA02 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.56 48.0 3.08e-01 90.9% 48.7%
3akjA02 1.10.1070.20 Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, Domain 5 › 0.55 46.0 3.23e-01 90.9% 53.2%
8eg0B01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 44.0 2.76e-01 89.4% 73.1%
8agaA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 40.0 3.32e-01 92.4% 43.7%
1ybiA01 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.52 38.0 3.06e-01 78.8% 48.3%
8oqxA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.52 35.0 3.02e-01 71.2% 66.7%
3ga8A00 3.10.20.860 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.52 41.0 4.12e-01 87.9% 88.1%
1x9mA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.51 44.0 3.06e-01 97.0% 80.1%
3weeA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.51 35.0 2.59e-01 74.2% 29.0%
6fezA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.51 34.0 3.17e-01 72.7% 69.1%
2iw3A05 2.40.50.990 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.50 36.0 3.05e-01 75.8% 78.9%
2fe0A01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.50 36.0 3.11e-01 75.8% 94.4%
1z1bA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.50 30.0 3.27e-01 77.3% 70.2%
5r0dB01 2.60.34.20 Mainly Beta › Sandwich › Substrate Binding Domain Of DNAk; Chain A, domain 1 › 0.50 35.0 2.77e-01 74.2% 88.8%
3oqgA00 3.40.1440.50 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › 0.50 39.0 3.01e-01 90.9% 79.0%
ECOD (27)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4992194 243.6.1.0 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain 0.76 49.0 4.38e-01 74.2% 47.8%
5016305 243.6.1.0 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain 0.70 46.0 4.11e-01 74.2% 47.4%
3740580 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.67 48.0 3.46e-01 83.3% 28.0%
3933631 5001.1.1.0 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.65 58.0 3.81e-01 100.0% 43.1%
4661764 601.52.1.2 ↗ alpha bundles › Four-helical up-and-down bundle › Flagellar hook-associated protein 1 helical domain › Flagellar hook-associated protein 1 helical domain › FlgK_D1 0.63 53.0 3.30e-01 92.4% 40.5%
3627712 5001.1.1.0 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.62 55.0 3.20e-01 100.0% 20.2%
3989654 213.1.1.1 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.61 43.0 3.31e-01 74.2% 50.3%
3401287 603.2.1.12 ↗ alpha bundles › STAT-like › STAT › STAT › 7tm_7 0.61 52.0 3.23e-01 100.0% 68.7%
5044375 2484.1.1.302 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB 0.60 49.0 3.28e-01 90.9% 24.3%
4982318 3501.1.1.1 ↗ a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 0.60 39.0 4.10e-01 83.3% 73.3%
4933600 2011.2.1.7 ↗ a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › PAC2 0.60 43.0 3.01e-01 75.8% 28.1%
4233827 1.1.5.44 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › SecDF_P1_head 0.60 41.0 3.21e-01 72.7% 80.7%
3476809 206.1.2.3 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › SAICAR synthase › IPK 0.59 52.0 3.38e-01 97.0% 30.4%
3197800 221.13.1.2 ↗ a+b two layers › beta-Grasp › Mitochondrial calcium uniporter N-terminal domain › Mitochondrial calcium uniporter N-terminal domain › RRG1_C 0.59 51.0 3.67e-01 90.9% 36.4%
3924659 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.58 51.0 3.20e-01 93.9% 36.3%
3550161 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.58 41.0 3.30e-01 75.8% 82.6%
4980141 2011.2.1.7 ↗ a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › PAC2 0.58 41.0 2.81e-01 75.8% 25.1%
3929962 3877.1.1.0 ↗ alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC 0.57 45.0 3.02e-01 90.9% 22.0%
3939667 5001.1.1.66 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Srg 0.56 51.0 3.23e-01 100.0% 38.0%
3616860 60.1.1.9 ↗ beta barrels › SPOC domain-like › SPOC domain-related › SPOC domain › Beta-barrel_INTS6 0.55 38.0 3.03e-01 75.8% 61.4%
4946324 5001.1.1.0 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.55 48.0 3.25e-01 93.9% 75.9%
4493573 4964.1.1.2 ↗ alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › RNA_pol 0.53 40.0 3.00e-01 86.4% 73.0%
4241745 883.1.1.8 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › Grp7_allergen 0.52 43.0 3.16e-01 93.9% 79.5%
3787720 2011.2.1.7 ↗ a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › PAC2 0.52 38.0 2.71e-01 83.3% 57.6%
3405271 2011.2.1.7 ↗ a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › PAC2 0.52 38.0 2.63e-01 78.8% 55.9%
3307706 2484.1.1.1 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 0.52 36.0 2.81e-01 92.4% 34.3%
4261822 2007.1.2.4 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor 0.50 34.0 2.58e-01 72.7% 27.0%