←Back to structures

NC_073365.1__YP_010751031.1__QDA01_gp81__00023

Bact-Vir

Identity

Accession:: NC_073365 ↗
Kingdom:: phage

Quality

62.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Hodgkinviridae› Mementomorivirus› Microbacterium_phage_Cinna

TaxID: 2591215

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 21-73

PDB

Domain cluster: representative

CATH (10)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3mbhA00	3.40.1190.20	Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase	0.67	48.0	3.00e-01	75.5%	94.8%
2ntkB00	3.60.20.20	Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Inosine monophosphate cyclohydrolase-like	0.66	50.0	3.32e-01	81.1%	39.1%
3es1A01	2.20.70.150	Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; ›	0.59	29.0	3.33e-01	79.2%	54.1%
2esbA00	3.90.190.10	Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily	0.56	48.0	3.44e-01	98.1%	73.5%
2py5A05	4.10.80.20	Few Secondary Structures › Irregular › Rhinovirus 14, subunit 4 › DNA polymerase; domain 5	0.56	30.0	3.64e-01	79.2%	70.0%
2lmzA00	1.10.10.2920	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A ›	0.54	40.0	4.34e-01	84.9%	100.0%
3k69A00	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.52	36.0	2.65e-01	73.6%	98.7%
4nzrM01	3.30.1370.200	Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 ›	0.52	38.0	3.36e-01	83.0%	73.8%
6cngA03	3.30.1180.10	Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 ›	0.51	37.0	2.87e-01	77.4%	60.2%
1wi9A01	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.50	35.0	3.42e-01	73.6%	91.4%

ECOD (9)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3715885	109.3.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat	0.58	43.0	3.29e-01	83.0%	99.3%
3633074	206.1.1.0 ↗	a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase	0.56	42.0	2.92e-01	84.9%	53.2%
3164272	4018.1.1.2 ↗	a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › Inositol_P	0.56	41.0	3.08e-01	83.0%	53.3%
3706721	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.55	40.0	3.75e-01	86.8%	96.0%
4316396	327.11.2.73 ↗	a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › HD	0.54	41.0	2.80e-01	90.6%	53.3%
3505699	109.2.1.5 ↗	alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › Trehalase	0.54	41.0	2.30e-01	94.3%	62.2%
3924514	109.4.1.83 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Suf	0.53	46.0	2.93e-01	100.0%	44.5%
3804348	263.1.1.1 ↗	a+b three layers › SRF-like › SRF-like › SRF-like › SRF-TF	0.53	37.0	3.18e-01	73.6%	74.1%
3497675	2004.1.1.325 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › TRAPPC-Trs85	0.50	32.0	2.30e-01	83.0%	22.6%