←Back to structures
NC_073365.1__YP_010751077.1__QDA01_gp35__00069
Bact-VirNC_073365.1__YP_010751077.1__QDA01_gp35__00069
Identity
- Accession:
- NC_073365 ↗
- Kingdom:
- phage
Quality
91.6
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Hodgkinviridae›
Mementomorivirus›
Microbacterium_phage_Cinna
TaxID: 2591215
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-102
Domain cluster:
rep: MN908685.1__QIG57821.1__SEA_PAULODIABOLI_87__00087__D793-884_909-936
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1o6eA00 | 3.20.16.10 | Alpha Beta › Alpha-Beta Barrel › Serine Protease, Human Cytomegalovirus Protease; Chain A › Herpesvirus/Caudovirus protease domain | 0.71 | 65.0 | 4.95e-01 | 100.0% | 60.4% |
| 1at3A00 | 3.20.16.10 | Alpha Beta › Alpha-Beta Barrel › Serine Protease, Human Cytomegalovirus Protease; Chain A › Herpesvirus/Caudovirus protease domain | 0.71 | 66.0 | 5.03e-01 | 100.0% | 53.9% |
| 2ey4D00 | 2.40.10.230 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Probable tRNA pseudouridine synthase domain | 0.69 | 41.0 | 4.67e-01 | 98.0% | 80.0% |
| 3u28C00 | 2.40.10.230 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Probable tRNA pseudouridine synthase domain | 0.68 | 45.0 | 4.77e-01 | 95.0% | 75.0% |
| 2eqnA01 | 2.40.10.230 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Probable tRNA pseudouridine synthase domain | 0.63 | 41.0 | 4.37e-01 | 96.0% | 77.0% |
| 2ra1A04 | 2.60.40.1220 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.60 | 46.0 | 4.69e-01 | 99.0% | 85.6% |
| 2cxiA01 | 3.30.56.10 | Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › | 0.55 | 36.0 | 4.06e-01 | 100.0% | 87.3% |
| 5yzzC00 | 2.40.330.10 | Mainly Beta › Beta Barrel › At1g16640 B3 domain › DNA-binding pseudobarrel domain | 0.51 | 40.0 | 3.93e-01 | 100.0% | 77.5% |
| 4k2xB02 | 3.30.70.2450 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.50 | 34.0 | 3.63e-01 | 100.0% | 84.1% |
| 2c4mA01 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.50 | 36.0 | 2.37e-01 | 75.2% | 91.2% |
ECOD (62)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5083920 | 50.1.1.0 ↗ | beta barrels › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin | 0.87 | 81.0 | 7.17e-01 | 99.0% | 95.0% |
| 4995675 | 50.1.1.0 ↗ | beta barrels › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin | 0.87 | 81.0 | 6.76e-01 | 100.0% | 81.2% |
| 3585229 | 50.1.1.2 ↗ | beta barrels › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Peptidase_S77 | 0.86 | 81.0 | 7.12e-01 | 100.0% | 91.4% |
| 5004197 | 1.1.16.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain | 0.84 | 60.0 | 6.12e-01 | 74.3% | 99.0% |
| 3166306 | 50.1.1.4 ↗ | beta barrels › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › DUF2213 | 0.81 | 76.0 | 6.48e-01 | 100.0% | 88.9% |
| 3958771 | 1.1.16.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain | 0.77 | 53.0 | 5.02e-01 | 100.0% | 60.0% |
| 3955063 | 1.1.16.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD | 0.77 | 53.0 | 4.66e-01 | 100.0% | 49.7% |
| 3954144 | 1.1.16.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD | 0.76 | 53.0 | 4.63e-01 | 100.0% | 49.7% |
| 3290618 | 1.1.16.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD | 0.76 | 53.0 | 4.68e-01 | 100.0% | 51.4% |
| 3277706 | 1.1.16.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD | 0.76 | 53.0 | 4.67e-01 | 100.0% | 51.4% |
| 3283246 | 1.1.16.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD | 0.76 | 54.0 | 4.77e-01 | 100.0% | 51.7% |
| 3953377 | 1.1.16.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD | 0.76 | 53.0 | 4.61e-01 | 100.0% | 49.7% |
| 3959560 | 1.1.16.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain | 0.76 | 52.0 | 5.11e-01 | 100.0% | 65.5% |
| 3957158 | 1.1.16.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD | 0.75 | 52.0 | 5.20e-01 | 100.0% | 68.6% |
| 3290923 | 1.1.16.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD | 0.75 | 52.0 | 4.71e-01 | 100.0% | 53.3% |
| 3286366 | 1.1.16.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD | 0.75 | 52.0 | 4.69e-01 | 100.0% | 53.3% |
| 3957231 | 1.1.16.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain | 0.74 | 52.0 | 5.04e-01 | 100.0% | 65.5% |
| 3959338 | 1.1.16.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD | 0.74 | 52.0 | 4.58e-01 | 100.0% | 50.3% |
| 3956627 | 1.1.16.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD | 0.74 | 51.0 | 4.56e-01 | 100.0% | 51.4% |
| 3288888 | 1.1.16.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD | 0.73 | 51.0 | 4.62e-01 | 100.0% | 54.1% |
| 3347366 | 1.1.16.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD | 0.73 | 51.0 | 4.90e-01 | 100.0% | 63.5% |
| 3669715 | 1.1.16.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD | 0.73 | 51.0 | 4.22e-01 | 100.0% | 42.9% |
| 3957925 | 1.1.16.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD | 0.72 | 52.0 | 4.61e-01 | 100.0% | 53.6% |
| 3960414 | 1.1.16.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain | 0.72 | 50.0 | 4.38e-01 | 100.0% | 49.7% |
| 4654097 | 1.1.16.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD | 0.71 | 50.0 | 4.28e-01 | 100.0% | 47.1% |
| 4933363 | 1.1.7.20 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1 | 0.70 | 42.0 | 4.76e-01 | 75.2% | 81.1% |
| 5010595 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.70 | 44.0 | 4.81e-01 | 97.0% | 76.5% |
| 4969578 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.70 | 42.0 | 4.82e-01 | 98.0% | 82.4% |
| 3282819 | 1.1.16.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD | 0.69 | 48.0 | 4.30e-01 | 100.0% | 51.4% |
| 2771876 | 1.1.16.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD | 0.69 | 47.0 | 4.53e-01 | 93.1% | 61.9% |
| 5059785 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.69 | 43.0 | 4.81e-01 | 97.0% | 80.0% |
| 4006501 | 1.1.16.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD | 0.69 | 50.0 | 4.34e-01 | 100.0% | 51.0% |
| 3959311 | 1.1.16.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD | 0.68 | 50.0 | 5.18e-01 | 90.1% | 81.1% |
| 5002426 | 1.1.7.20 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1 | 0.68 | 46.0 | 4.94e-01 | 97.0% | 81.2% |
| 5051893 | 1.1.7.20 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1 | 0.68 | 44.0 | 4.88e-01 | 97.0% | 82.5% |
| 4263415 | 1.1.7.20 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1 | 0.68 | 45.0 | 4.75e-01 | 95.0% | 75.6% |
| 3710481 | 1.1.7.20 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1 | 0.68 | 46.0 | 4.85e-01 | 96.0% | 77.8% |
| 2869319 | 1.1.7.20 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1 | 0.68 | 46.0 | 4.74e-01 | 95.0% | 72.4% |
| 4991129 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.68 | 42.0 | 4.57e-01 | 96.0% | 75.0% |
| 4964309 | 1.1.7.20 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1 | 0.67 | 42.0 | 4.74e-01 | 98.0% | 85.1% |
| 5041953 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.67 | 40.0 | 4.94e-01 | 97.0% | 100.0% |
| 5041607 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.66 | 40.0 | 4.58e-01 | 98.0% | 82.4% |
| 5074238 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.66 | 41.0 | 4.67e-01 | 98.0% | 84.0% |
| 3289705 | 1.1.16.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD | 0.66 | 53.0 | 4.69e-01 | 84.2% | 76.4% |
| 4942485 | 1.1.7.20 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1 | 0.66 | 43.0 | 4.76e-01 | 97.0% | 83.7% |
| 5077063 | 1.1.7.20 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1 | 0.66 | 40.0 | 4.51e-01 | 98.0% | 81.3% |
| 3602200 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.66 | 38.0 | 4.45e-01 | 98.0% | 82.9% |
| 3996145 | 1.1.7.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c | 0.65 | 43.0 | 3.93e-01 | 97.0% | 52.3% |
| 5017568 | 1.1.7.20 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1 | 0.65 | 42.0 | 4.66e-01 | 97.0% | 83.7% |
| 4945432 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.64 | 40.0 | 4.36e-01 | 97.0% | 75.3% |
| 4259810 | 1.1.7.20 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1 | 0.64 | 41.0 | 4.51e-01 | 98.0% | 81.2% |
| 3959024 | 1.1.16.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain | 0.64 | 53.0 | 5.25e-01 | 87.1% | 99.0% |
| 5041618 | 1.1.7.20 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1 | 0.63 | 44.0 | 4.53e-01 | 97.0% | 76.6% |
| 3483841 | 1.1.7.20 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1 | 0.63 | 44.0 | 4.46e-01 | 97.0% | 71.8% |
| 3272018 | 1.1.7.20 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1 | 0.63 | 45.0 | 4.55e-01 | 97.0% | 73.8% |
| 4005635 | 1.1.16.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD | 0.60 | 51.0 | 4.72e-01 | 100.0% | 72.8% |
| 3943528 | 1.1.16.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain | 0.60 | 51.0 | 4.77e-01 | 100.0% | 75.8% |
| 3982061 | 1.1.16.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD | 0.60 | 51.0 | 4.73e-01 | 100.0% | 73.6% |
| 4970211 | 1.1.8.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain | 0.58 | 48.0 | 4.76e-01 | 100.0% | 83.8% |
| 4913412 | 1.1.16.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain | 0.58 | 49.0 | 4.57e-01 | 100.0% | 73.6% |
| 5000784 | 1.1.7.20 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1 | 0.55 | 42.0 | 4.23e-01 | 97.0% | 81.0% |
| 3388311 | 1.1.7.100 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PGBA_N | 0.55 | 39.0 | 4.25e-01 | 96.0% | 89.4% |