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NC_073368.1__YP_010751365.1__QDA04_gp74__00074

Bact-Vir

NC_073368.1__YP_010751365.1__QDA04_gp74__00074

Identity

Accession:
NC_073368 ↗
Kingdom:
phage

Quality

81.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Hodgkinviridae› Meganvirus› Microbacterium_phage_Megan

TaxID: 2656551

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 72-176
PDB
Domain cluster: rep: OR553905.1__WNN95131.1__SEA_MAGRITTE_180__00154__D10-101
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2n8xA00 3.30.160.150 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain 0.66 46.0 3.96e-01 72.4% 68.1%
2zf3C00 2.50.20.30 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › 0.56 34.0 2.89e-01 87.6% 34.1%
3al9A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 38.0 2.52e-01 73.3% 31.2%
2yz0A00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.53 40.0 3.70e-01 80.0% 82.6%
4l8hB00 3.30.380.10 Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein 0.53 41.0 3.96e-01 83.8% 94.3%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4508852 330.4.1.1 ↗ a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.68 48.0 4.71e-01 72.4% 87.8%
4661118 218.1.1.2 ↗ a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › Enolase_N 0.61 44.0 4.21e-01 76.2% 98.4%
3599909 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.60 41.0 4.08e-01 70.5% 77.3%
3700285 330.1.1.22 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › PF26536 0.59 43.0 4.02e-01 78.1% 73.3%
5035584 375.1.1.31 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Elf1 0.58 36.0 4.08e-01 78.1% 82.5%
3700284 330.1.1.22 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › PF26536 0.57 42.0 3.58e-01 78.1% 57.1%
3702616 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.57 39.0 3.73e-01 70.5% 82.4%
4018672 4.1.1.225 ↗ beta barrels › SH3 › SH3 › SH3 › DUF7025 0.57 40.0 3.91e-01 72.4% 84.3%
4012953 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.56 43.0 3.84e-01 82.9% 82.7%
3634542 4099.1.1.0 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.56 39.0 3.37e-01 72.4% 64.2%
5010547 4.26.1.0 ↗ beta barrels › SH3 › Chromatin protein Cren7 › Chromatin protein Cren7 0.55 30.0 3.53e-01 76.2% 75.7%
3799692 2484.1.1.50 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Dimer_Tnp_hAT 0.54 40.0 2.58e-01 78.1% 84.6%
3531937 2484.1.1.317 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF28925 0.54 43.0 2.75e-01 84.8% 86.9%
3190995 4.8.1.22 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › DUF7025 0.54 43.0 3.67e-01 86.7% 72.0%
3526186 2484.1.1.204 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF27046, PF27073 0.53 42.0 2.74e-01 85.7% 83.8%
3842317 213.1.1.1 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.53 38.0 3.07e-01 76.2% 98.1%
5028275 206.1.3.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.52 36.0 2.49e-01 71.4% 38.6%
3270992 216.1.1.3 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UEV 0.50 35.0 3.24e-01 73.3% 73.6%