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NC_073373.1__YP_010751747.1__QDA09_gp02__00002

Bact-Vir

NC_073373.1__YP_010751747.1__QDA09_gp02__00002

Identity

Accession:
NC_073373 ↗
Kingdom:
phage

Quality

69.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Hodgkinviridae› Metamorphoovirus› Microbacterium_phage_Tyrumbra

TaxID: 2596974

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 32-97
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1jhdA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.57 39.0 2.84e-01 72.7% 31.5%
3v9rB00 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.56 41.0 4.02e-01 84.8% 70.8%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3606635 904.1.1.52 ↗ few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain › zf-B_box, PML_CC 0.61 49.0 3.64e-01 90.9% 33.5%
4024465 177.1.1.2 ↗ alpha bundles › Phospholipase C/P1 nuclease › Phospholipase C/P1 nuclease › Phospholipase C/P1 nuclease › S1-P1_nuclease 0.59 44.0 2.85e-01 78.8% 51.9%
3723666 109.4.1.356 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans 0.58 51.0 3.09e-01 100.0% 81.5%
3185639 1174.1.1.2 ↗ alpha complex topology › Potassium channel TMEM175 › Potassium channel TMEM175 › Potassium channel TMEM175 › LtrA 0.56 44.0 3.05e-01 86.4% 68.3%
3664880 312.1.1.2 ↗ a+b three layers › HIT-like › HIT-related › HIT-related › HIT 0.55 46.0 3.57e-01 90.9% 51.1%
3250868 904.1.1.1 ↗ few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain › zf-B_box 0.51 35.0 3.15e-01 71.2% 74.1%