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NC_073373.1__YP_010751754.1__QDA09_gp09__00009

Bact-Vir

NC_073373.1__YP_010751754.1__QDA09_gp09__00009

Identity

Accession:
NC_073373 ↗
Kingdom:
phage

Quality

91.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Hodgkinviridae› Metamorphoovirus› Microbacterium_phage_Tyrumbra

TaxID: 2596974

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 23-78
PDB
Domain cluster: representative
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3zghA00 2.60.40.3400 Mainly Beta › Sandwich › Immunoglobulin-like › 0.59 44.0 3.14e-01 82.1% 29.4%
3eyeA00 3.40.35.10 Alpha Beta › 3-Layer(aba) Sandwich › Fructose Permease › Phosphotransferase system, sorbose subfamily IIB component 0.58 47.0 3.51e-01 92.9% 94.8%
1ix5A00 3.10.50.40 Alpha Beta › Roll › Chitinase A; domain 3 › 0.57 42.0 3.17e-01 80.4% 90.7%
3m1cA04 2.60.40.3190 Mainly Beta › Sandwich › Immunoglobulin-like › Herpesvirus glycoprotein H, C-terminal domain 0.56 42.0 3.34e-01 85.7% 90.2%
1ynjJ01 1.10.1790.20 Mainly Alpha › Orthogonal Bundle › PTS-regulatory domain, PRD › 0.56 42.0 3.39e-01 85.7% 40.5%
4gi3C00 3.30.60.30 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.55 37.0 3.73e-01 91.1% 68.4%
1ywlA00 3.40.1440.10 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease 0.55 38.0 3.28e-01 73.2% 84.4%
3rkgA01 2.40.128.330 Mainly Beta › Beta Barrel › Lipocalin › 0.55 43.0 3.75e-01 91.1% 94.7%
2xqyA03 2.60.40.3190 Mainly Beta › Sandwich › Immunoglobulin-like › Herpesvirus glycoprotein H, C-terminal domain 0.54 41.0 3.21e-01 83.9% 88.7%
2yocA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 38.0 3.17e-01 82.1% 58.3%
1wh2A01 3.30.1490.40 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › GYF domain 0.51 40.0 3.97e-01 87.5% 85.2%
2jveA00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.51 37.0 3.54e-01 89.3% 63.4%
2x5pA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 38.0 3.19e-01 82.1% 44.2%
1hx6A02 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.51 40.0 3.02e-01 85.7% 73.0%
1hx6B01 2.70.9.30 Mainly Beta › Distorted Sandwich › Adenovirus Type 2 Hexon; domain 4 › Viral coat protein p3 0.50 38.0 2.54e-01 82.1% 76.0%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4946799 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.65 44.0 3.56e-01 83.9% 36.4%
4464372 2492.1.1.0 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.63 48.0 4.15e-01 83.9% 68.5%
5023611 2492.1.1.0 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.62 47.0 3.99e-01 83.9% 66.0%
4927334 2492.1.1.0 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.60 46.0 3.88e-01 85.7% 64.3%
3525671 376.1.1.61 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › Rtf2 0.60 50.0 4.98e-01 100.0% 90.0%
4933077 2492.1.1.0 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.59 44.0 3.77e-01 83.9% 67.4%
5055810 2492.1.1.0 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.59 45.0 3.84e-01 85.7% 65.3%
4932504 2492.1.1.0 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.58 44.0 3.77e-01 83.9% 67.4%
5036180 2492.1.1.0 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.58 44.0 3.81e-01 85.7% 65.3%
4956211 2492.1.1.0 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.58 44.0 3.81e-01 83.9% 68.9%
2721320 386.1.1.7 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-U11-48K 0.55 34.0 3.71e-01 78.6% 77.8%
3634461 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.55 39.0 3.59e-01 96.4% 55.4%
1309233 3145.1.1.1 ↗ beta sandwiches › C-terminal domain of envelope glycoprotein H › C-terminal domain of envelope glycoprotein H › C-terminal domain of envelope glycoprotein H › Herpes_glycoH_C 0.54 41.0 3.10e-01 83.9% 79.7%
5036714 2492.1.1.16 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › TM1506 0.53 37.0 3.02e-01 85.7% 35.8%
3909165 223.1.1.29 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_11 0.53 36.0 2.71e-01 71.4% 79.1%
3412052 379.1.1.0 ↗ few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors 0.51 38.0 3.80e-01 94.6% 75.0%