←Back to structures

NC_073376.1__YP_010752100.1__QDA12_gp72__00072

Bact-Vir

NC_073376.1__YP_010752100.1__QDA12_gp72__00072

Identity

Accession:
NC_073376 ↗
Kingdom:
phage

Quality

86.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Hodgkinviridae› Metamorphoovirus› Microbacterium_phage_Teamocil

TaxID: 2656554

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-64
PDB
Domain cluster: representative
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1xjkA00 3.20.70.20 Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › 0.80 47.0 2.65e-01 100.0% 5.4%
3nwnA00 3.40.850.10 Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain 0.70 37.0 2.32e-01 82.5% 9.4%
2qrdE01 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.56 35.0 2.48e-01 77.2% 19.4%
3qwmA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 47.0 3.61e-01 96.5% 89.0%
2rijA01 3.30.70.2010 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 38.0 2.82e-01 96.5% 25.3%
6uqjA02 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.52 44.0 2.75e-01 96.5% 25.5%
2hfvA01 3.30.70.790 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › UreE, C-terminal domain 0.51 37.0 3.46e-01 82.5% 62.3%
3lw6A00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.50 39.0 2.67e-01 89.5% 78.4%
3eqvA03 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.50 42.0 3.01e-01 96.5% 47.5%
ECOD (11)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3970853 7523.1.1.0 ↗ a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II 0.84 35.0 2.41e-01 96.5% 13.7%
4025310 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.58 47.0 3.60e-01 87.7% 96.2%
4042634 109.4.1.382 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TIMELESS 0.55 42.0 2.73e-01 89.5% 78.7%
4373808 1.11.1.1 ↗ beta barrels › cradle loop barrel › Photosystem II accessory factor Psb28 › Photosystem II accessory factor Psb28 › Psb28 0.53 38.0 3.19e-01 86.0% 40.9%
3713148 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.53 42.0 3.76e-01 96.5% 80.0%
3304432 2.5.1.1 ↗ beta barrels › OB-fold › Inorganic pyrophosphatase › Inorganic pyrophosphatase › Pyrophosphatase 0.52 46.0 3.19e-01 100.0% 86.5%
4419456 4076.4.1.0 ↗ a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain 0.52 30.0 3.23e-01 84.2% 67.3%
4593896 4076.3.1.0 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.51 29.0 3.24e-01 84.2% 71.1%
4466468 7026.1.1.5 ↗ beta meanders › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 › ATG2_CAD 0.51 39.0 2.80e-01 91.2% 74.3%
418302 2003.1.3.1 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO 0.51 41.0 2.96e-01 93.0% 32.8%
4934987 4076.3.1.0 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.50 29.0 3.26e-01 84.2% 73.3%