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NC_073427.1__YP_010752163.1__QDW15_gp39__00039

Bact-Vir

Identity

Accession:: NC_073427 ↗
Kingdom:: phage

Quality

89.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Armstrongvirus› Microbacterium_phage_Franklin22

TaxID: 2894293

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-49

PDB

Domain cluster: representative

CATH (15)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2yztA00	3.30.160.250	Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain ›	0.65	45.0	3.99e-01	89.1%	50.0%
5zspA01	3.90.1150.10	Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1	0.59	42.0	3.08e-01	76.1%	80.6%
3f7pD01	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.58	45.0	3.62e-01	100.0%	44.0%
7ox5A01	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.57	46.0	3.59e-01	100.0%	40.8%
1vi7A01	3.30.230.30	Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › Impact, N-terminal domain	0.57	41.0	3.19e-01	89.1%	54.8%
1qysA00	3.30.1710.10	Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein	0.56	50.0	4.00e-01	100.0%	53.3%
2jvfA00	3.30.1710.10	Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein	0.56	48.0	3.87e-01	100.0%	52.1%
6s2wA01	3.30.2260.10	Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary	0.56	45.0	3.93e-01	100.0%	65.9%
2zw2A00	3.30.1280.10	Alpha Beta › 2-Layer Sandwich › Mth169; Chain: A , › Phosphoribosylformylglycinamidine synthase subunit PurS	0.55	45.0	3.89e-01	100.0%	92.9%
2wadA02	3.90.1310.10	Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › Penicillin-binding protein 2a (Domain 2)	0.54	38.0	2.90e-01	100.0%	26.4%
6jptA00	3.30.230.90	Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 ›	0.54	42.0	3.18e-01	89.1%	38.0%
6todA01	1.20.1070.10	Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins	0.54	42.0	2.57e-01	87.0%	54.7%
2kgfA00	1.10.375.10	Mainly Alpha › Orthogonal Bundle › Human Immunodeficiency Virus Type 1 Capsid Protein › Human Immunodeficiency Virus Type 1 Capsid Protein	0.53	41.0	3.00e-01	89.1%	95.0%
6n2nC03	3.40.50.920	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold ›	0.51	41.0	3.16e-01	97.8%	36.9%
2hvfA00	3.40.5.10	Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › Ribosomal protein L9, N-terminal domain	0.51	37.0	3.65e-01	100.0%	73.1%

ECOD (8)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4952416	304.51.1.1 ↗	a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › Cas_Cas6_C	0.63	44.0	3.27e-01	73.9%	84.0%
3758310	4.8.1.37 ↗	beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo, Chromo_shadow	0.60	48.0	3.59e-01	93.5%	64.8%
3230811	11.1.1.2 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3	0.58	45.0	3.62e-01	100.0%	43.2%
3326759	284.1.3.1 ↗	a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › SNF5	0.56	47.0	4.04e-01	95.7%	65.3%
3645411	223.1.1.79 ↗	a+b three layers › Profilin-like › sensor domains › sensor domains › GAF_NLP	0.55	43.0	2.93e-01	100.0%	45.0%
3187872	221.1.1.4 ↗	a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PB1	0.55	48.0	3.75e-01	95.7%	87.2%
5012895	3115.1.1.0 ↗	a+b two layers › GP2-like › RplX-like › RplX-like	0.52	43.0	4.18e-01	100.0%	90.9%
3652038	2484.1.1.67 ↗	mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3	0.51	45.0	3.72e-01	100.0%	62.4%