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NC_073428.1__YP_010752212.1__QDW16_gp51__00017

Bact-Vir

NC_073428.1__YP_010752212.1__QDW16_gp51__00017

Identity

Accession:
NC_073428 ↗
Kingdom:
phage

Quality

76.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Dismasvirus› Microbacterium_phage_Quenya

TaxID: 2776868

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-105
PDB
Domain cluster: rep: KY250482.1__APQ42523.1__phi16_gp018__00018__D6-142
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF14594.14 best Sipho_Gp37 39.2 5.90e-10 96.1% 23.6%
CATH (31)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1wruA01 2.30.300.10 Mainly Beta › Roll › Phage tail proteins - horseshoe like beta roll fold › Baseplate protein-like domain - beta roll fold 0.74 59.0 4.88e-01 98.0% 49.1%
1qz8A01 2.40.10.250 Mainly Beta › Beta Barrel › Thrombin, subunit H › Replicase NSP9 0.65 49.0 4.92e-01 97.1% 78.1%
2qlvB02 2.20.25.290 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.65 25.0 3.77e-01 79.4% 89.5%
2pn5A05 2.60.40.1930 Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain 0.65 41.0 4.24e-01 82.4% 67.7%
3eaaA00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.63 56.0 4.85e-01 100.0% 79.0%
4r6uA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 33.0 3.59e-01 81.4% 60.2%
1dr9A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 39.0 4.01e-01 79.4% 67.4%
1cs6A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 42.0 4.20e-01 89.2% 68.6%
8ezmH02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 45.0 4.40e-01 80.4% 76.8%
3tvjB02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.59 45.0 4.50e-01 100.0% 78.5%
4hudA01 3.30.2000.40 Alpha Beta › 2-Layer Sandwich › STM4215-like › Myoviridae tail sheath stabiliser 0.58 51.0 4.11e-01 100.0% 80.0%
1bqsA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 42.0 4.02e-01 81.4% 64.7%
2qeaB00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.58 52.0 4.52e-01 100.0% 66.7%
7rskA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 41.0 4.01e-01 81.4% 68.8%
4kc3B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 38.0 3.98e-01 86.3% 74.7%
6toaF01 3.30.2000.30 Alpha Beta › 2-Layer Sandwich › STM4215-like › 0.56 49.0 4.60e-01 99.0% 96.2%
2b39A03 2.60.40.1940 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 43.0 4.07e-01 98.0% 67.2%
4c92C00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.56 29.0 3.26e-01 93.1% 62.0%
4kh9B02 2.60.40.1930 Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain 0.56 39.0 3.80e-01 83.3% 64.6%
3e3pA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.56 37.0 4.16e-01 75.5% 88.5%
1lp9E02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 34.0 3.74e-01 79.4% 77.5%
6ue9L02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 37.0 3.50e-01 78.4% 59.8%
4wsqB00 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.52 36.0 2.62e-01 81.4% 23.5%
1vm0A00 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.52 38.0 3.99e-01 95.1% 83.9%
1wubA00 2.40.128.110 Mainly Beta › Beta Barrel › Lipocalin › Lipid/polyisoprenoid-binding, YceI-like 0.52 39.0 3.34e-01 81.4% 76.1%
1b78A00 3.90.950.10 Alpha Beta › Alpha-Beta Complex › Maf protein › 0.51 46.0 3.78e-01 100.0% 78.3%
1k8wA01 3.30.2350.10 Alpha Beta › 2-Layer Sandwich › Pseudouridine synthase › Pseudouridine synthase 0.51 37.0 2.89e-01 76.5% 52.3%
2amhA00 3.90.950.10 Alpha Beta › Alpha-Beta Complex › Maf protein › 0.51 46.0 3.72e-01 100.0% 85.1%
1nc7A00 2.60.290.11 Mainly Beta › Sandwich › Hypothetical Protein Tm1070; Chain: A › TM1070-like 0.51 40.0 3.81e-01 82.4% 86.2%
2wnwA01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.51 38.0 3.78e-01 91.2% 76.4%
3htyA00 2.40.128.280 Mainly Beta › Beta Barrel › Lipocalin › 0.50 32.0 3.29e-01 94.1% 67.0%
ECOD (38)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4954563 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.85 67.0 7.29e-01 96.1% 98.8%
3977382 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.72 62.0 6.42e-01 99.0% 100.0%
5083300 1.1.13.6 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tail_2 0.70 63.0 5.60e-01 100.0% 91.0%
4273561 1.1.7.91 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25940 0.69 55.0 4.95e-01 87.3% 63.0%
3183073 1.1.5.10 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct 0.69 63.0 4.60e-01 100.0% 51.5%
3588663 9.4.1.0 ↗ beta barrels › Lipocalins/Streptavidin › D-aminopeptidase, middle and C-terminal domains › D-aminopeptidase, middle and C-terminal domains 0.69 40.0 4.14e-01 100.0% 61.1%
4319057 1.1.5.25 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.69 54.0 5.18e-01 100.0% 73.9%
4157825 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.69 63.0 5.78e-01 100.0% 93.8%
5021621 1.1.5.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.68 62.0 5.67e-01 100.0% 82.2%
4057590 1.1.5.86 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZN3 0.68 58.0 5.25e-01 100.0% 68.6%
2137681 1.1.5.25 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.68 50.0 4.96e-01 100.0% 73.4%
4949945 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.68 62.0 5.69e-01 100.0% 85.4%
3967435 1.1.13.5 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_GPD 0.68 56.0 5.75e-01 100.0% 96.8%
3966280 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.67 55.0 5.69e-01 100.0% 96.8%
3968713 1.1.13.5 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_GPD 0.65 52.0 5.50e-01 99.0% 98.9%
4026305 1.1.5.36 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyrid_ox_like 0.64 57.0 4.69e-01 100.0% 73.2%
3907134 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.63 53.0 4.12e-01 100.0% 42.3%
3943691 1.1.13.5 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_GPD 0.60 50.0 5.14e-01 98.0% 98.9%
3948350 1.1.13.5 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_GPD 0.59 52.0 5.27e-01 96.1% 98.0%
3946057 304.102.1.1 ↗ a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 0.58 42.0 3.24e-01 74.5% 43.0%
3164699 1.1.13.33 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › DNA_circ_N 0.57 51.0 4.97e-01 100.0% 96.5%
1070873 11.1.1.299 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF4785_2nd 0.56 38.0 3.79e-01 81.4% 67.0%
3801149 11.1.5.123 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › DUF3694 0.56 49.0 3.84e-01 100.0% 58.7%
3981007 319.3.1.0 ↗ beta sandwiches › HSP20-like › B2 domain of PilQ › B2 domain of PilQ 0.55 42.0 4.19e-01 79.4% 97.1%
3447675 11.2.1.37 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › DUF6598 0.55 43.0 4.17e-01 100.0% 73.9%
3600347 241.10.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › GAS2 domain › GAS2 domain 0.55 30.0 3.01e-01 98.0% 50.0%
3944288 319.3.1.1 ↗ beta sandwiches › HSP20-like › B2 domain of PilQ › B2 domain of PilQ › AMIN 0.55 41.0 3.97e-01 79.4% 88.7%
3258216 12.3.1.46 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › ComC_SSD 0.54 49.0 3.77e-01 100.0% 91.6%
4275176 304.102.1.5 ↗ a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N,DKCLD,TruB_C_2 0.52 37.0 2.90e-01 74.5% 39.1%
5005273 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.52 37.0 3.92e-01 79.4% 85.2%
4943359 304.102.1.13 ↗ a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_C_2 0.52 37.0 2.85e-01 74.5% 38.3%
4077036 304.102.1.6 ↗ a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N,TruB_C_2 0.51 36.0 2.88e-01 74.5% 39.6%
5019301 304.102.1.13 ↗ a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_C_2 0.51 37.0 2.82e-01 75.5% 36.0%
3678951 304.102.1.4 ↗ a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N 0.51 37.0 2.92e-01 77.5% 54.9%
5049530 319.1.1.23 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › PF29697 0.51 37.0 3.97e-01 81.4% 87.8%
3807657 304.102.1.6 ↗ a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N,TruB_C_2 0.50 37.0 2.86e-01 77.5% 52.0%
3231860 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.50 31.0 2.98e-01 97.1% 50.8%
5036917 304.102.1.13 ↗ a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_C_2 0.50 36.0 3.23e-01 75.5% 60.0%
D2 high residues 112-212
PDB
Domain cluster: rep: IMGVR_UViG_3300028631_000410-3300028631-Ga0302241_10090591__D47-159
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF14594.14 best Sipho_Gp37 63.3 2.80e-17 100.0% 26.3%
D3 high residues 408-466
PDB
Domain cluster: rep: AY328852.1__AAQ96491.1__X__00024__D88-161
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF07484.18 best Collar 60.3 2.00e-16 88.1% 77.2%
D4 high residues 474-662
PDB
D5 medium residues 240-304
PDB
Domain cluster: rep: OK040779.1__UDL14791.1__SEA_GRETCHEN_17__00017__D254-303