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NC_073430.1__YP_010752360.1__QDW18_gp34__00034

Bact-Vir

NC_073430.1__YP_010752360.1__QDW18_gp34__00034

Identity

Accession:
NC_073430 ↗
Kingdom:
phage

Quality

80.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Dismasvirus› Microbacterium_phage_Katzastrophic

TaxID: 2912654

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 13-101
PDB
Domain cluster: representative
CATH (25)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6bogA02 2.30.30.930 Mainly Beta › Roll › SH3 type barrels. › 0.84 44.0 5.31e-01 89.9% 76.7%
2efiA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.82 48.0 4.58e-01 92.1% 52.0%
5kcoA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.79 45.0 5.44e-01 93.3% 86.4%
2lccA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.77 46.0 4.98e-01 89.9% 71.1%
3cpfA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.76 45.0 5.23e-01 97.8% 81.5%
2qi2A01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.67 49.0 4.61e-01 96.6% 64.4%
3askA02 2.30.30.1150 Mainly Beta › Roll › SH3 type barrels. › 0.65 46.0 3.86e-01 96.6% 43.0%
2l3rA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.65 44.0 4.82e-01 93.3% 86.3%
3htyA00 2.40.128.280 Mainly Beta › Beta Barrel › Lipocalin › 0.63 37.0 3.70e-01 95.5% 54.3%
3agjF01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.63 56.0 4.93e-01 96.6% 67.7%
3pieC09 2.30.30.750 Mainly Beta › Roll › SH3 type barrels. › 0.60 48.0 4.70e-01 97.8% 76.8%
4epcA02 2.30.30.170 Mainly Beta › Roll › SH3 type barrels. › 0.58 41.0 4.54e-01 88.8% 91.5%
1jc4A00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.57 34.0 2.95e-01 100.0% 36.6%
7xpkA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.57 48.0 4.03e-01 94.4% 55.9%
8ct0B01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.56 45.0 3.59e-01 85.4% 74.7%
5choF00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 44.0 3.59e-01 85.4% 78.1%
4l82A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 43.0 3.57e-01 85.4% 78.2%
1i0rA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 43.0 3.50e-01 85.4% 78.3%
2jjdF02 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.53 38.0 2.70e-01 100.0% 25.2%
4rljA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.52 43.0 3.74e-01 93.3% 99.3%
1v3eA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.52 42.0 2.73e-01 88.8% 29.0%
2shpB03 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.52 38.0 2.70e-01 76.4% 41.7%
2yn5A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 30.0 3.20e-01 85.4% 65.8%
1s9cC01 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.51 42.0 3.65e-01 92.1% 93.1%
3wewA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.50 40.0 2.98e-01 86.5% 51.5%
ECOD (37)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3886139 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.80 50.0 5.85e-01 94.4% 87.7%
3848399 4.8.1.24 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_MORC2_6th 0.77 48.0 5.35e-01 93.3% 80.0%
3812766 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.75 51.0 5.71e-01 92.1% 88.6%
3918299 4.1.1.376 ↗ beta barrels › SH3 › SH3 › SH3 › Chromo_MORC2_6th 0.75 46.0 5.16e-01 93.3% 78.6%
3707346 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 56.0 5.86e-01 94.4% 85.5%
4932882 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.72 66.0 5.62e-01 97.8% 66.7%
5036729 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.67 58.0 5.20e-01 97.8% 69.2%
3630782 4.1.1.51 ↗ beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.66 50.0 4.17e-01 95.5% 48.3%
4536848 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.64 58.0 5.09e-01 97.8% 70.0%
5002153 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.64 49.0 4.71e-01 100.0% 73.0%
3802808 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.63 55.0 4.66e-01 95.5% 72.4%
1117666 4.1.1.103 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_12 0.63 48.0 4.94e-01 96.6% 83.5%
4941652 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.63 56.0 5.01e-01 97.8% 70.4%
3249352 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.63 55.0 4.83e-01 96.6% 67.7%
3519884 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.63 50.0 4.85e-01 96.6% 76.0%
4028378 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.62 55.0 4.86e-01 97.8% 68.5%
4215369 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.62 56.0 4.96e-01 97.8% 70.4%
4941831 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.62 55.0 4.87e-01 97.8% 69.2%
3639466 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.62 54.0 4.61e-01 96.6% 60.7%
5054152 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.62 54.0 4.86e-01 97.8% 68.8%
3597361 4.23.1.0 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like 0.61 53.0 4.72e-01 97.8% 66.2%
3700518 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.61 54.0 4.76e-01 97.8% 66.9%
4358168 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.60 44.0 4.17e-01 95.5% 62.7%
5058724 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.59 53.0 4.68e-01 97.8% 70.4%
5071182 222.1.1.1 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › MaoC_dehydratas 0.56 47.0 4.14e-01 93.3% 100.0%
3585426 4059.1.1.1 ↗ a+b complex topology › Serpins › Serpins › Serpins › Serpin 0.56 41.0 2.76e-01 79.8% 56.9%
4163867 2.4.1.0 ↗ beta barrels › OB-fold › MOP-like › MOP-like 0.55 42.0 3.76e-01 79.8% 70.7%
4013893 4.1.1.225 ↗ beta barrels › SH3 › SH3 › SH3 › DUF7025 0.55 45.0 4.07e-01 95.5% 65.8%
3492822 2007.2.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.54 39.0 2.67e-01 76.4% 44.4%
4768829 4059.1.1.1 ↗ a+b complex topology › Serpins › Serpins › Serpins › Serpin 0.53 40.0 2.76e-01 80.9% 61.1%
4958777 2484.1.1.18 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.53 40.0 2.77e-01 82.0% 66.6%
4034488 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.52 35.0 3.03e-01 89.9% 45.2%
4395961 212.1.1.14 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › CbiD 0.52 39.0 3.15e-01 100.0% 41.8%
3967111 3338.2.1.2 ↗ a+b two layers › Fragilysin-3 prodomain-like › Type II secretion chaperone CpaB › Type II secretion chaperone CpaB › BamI_lipocalin 0.52 44.0 3.89e-01 97.8% 65.6%
3791570 2007.2.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.51 37.0 2.56e-01 76.4% 40.0%
3399368 9.14.1.3 ↗ beta barrels › Lipocalins/Streptavidin › Uncharacterized protein YLR301W › Uncharacterized protein YLR301W › DUF7042 0.51 43.0 3.76e-01 94.4% 75.6%
3585032 9.1.1.50 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › DUF7042 0.50 43.0 3.83e-01 95.5% 67.7%