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NC_073434.1__YP_010752646.1__QDW22_gp49__00049

Bact-Vir

NC_073434.1__YP_010752646.1__QDW22_gp49__00049

Identity

Accession:
NC_073434 ↗
Kingdom:
phage

Quality

85.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Dismasvirus› Microbacterium_Phage_DirtyBubble

TaxID: 2590932

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 19-52_109-156
PDB
Domain cluster: representative
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
8d8lE01 3.30.230.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.62 37.0 3.67e-01 98.8% 55.8%
3cnxA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 33.0 2.76e-01 100.0% 32.6%
3ke7B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 33.0 2.77e-01 100.0% 33.8%
3jxfA00 3.10.200.10 Alpha Beta › Roll › Carbonic Anhydrase II › Alpha carbonic anhydrase 0.56 45.0 3.22e-01 90.2% 69.0%
3uc2A00 2.60.40.3340 Mainly Beta › Sandwich › Immunoglobulin-like › Domain of unknown function DUF4426 0.53 41.0 3.67e-01 86.6% 93.5%
2v3aA03 3.30.390.120 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › 0.53 33.0 3.69e-01 96.3% 81.2%
3wpwA00 3.30.1330.60 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › OmpA-like domain 0.53 45.0 3.78e-01 97.6% 84.6%
4i43B02 3.30.43.40 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 › Pre-mRNA-processing-splicing factor 8, U5-snRNA-binding domain 0.52 33.0 2.97e-01 100.0% 45.6%
4xfwA00 3.10.200.10 Alpha Beta › Roll › Carbonic Anhydrase II › Alpha carbonic anhydrase 0.51 40.0 3.02e-01 89.0% 63.3%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3197116 101.18.1.0 ↗ alpha arrays › HTH › DNA-binding domain of TraM protein › DNA-binding domain of TraM protein 0.71 29.0 4.33e-01 95.1% 100.0%
4028366 212.1.1.0 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like 0.61 36.0 3.81e-01 98.8% 64.9%
4671884 212.1.1.9 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › DNA_mis_repair 0.59 45.0 4.09e-01 98.8% 60.0%
None — 0.57 40.0 2.86e-01 73.2% 95.1%
3830910 212.1.1.9 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › DNA_mis_repair 0.56 46.0 4.12e-01 98.8% 64.3%
3968852 212.1.1.1 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › HSP90 0.55 39.0 3.27e-01 96.3% 41.3%
4616999 212.1.1.8 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribonuclease_P 0.55 45.0 3.96e-01 100.0% 60.8%
1146564 11.1.1.183 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF4426 0.53 41.0 3.71e-01 86.6% 96.7%
5040848 212.1.1.7 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › IGPD 0.53 41.0 3.98e-01 97.6% 73.7%
3484180 4967.1.1.0 ↗ alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases 0.52 35.0 2.36e-01 100.0% 17.8%
3597333 212.1.1.0 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like 0.52 46.0 3.32e-01 100.0% 47.1%
4379814 212.1.1.8 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribonuclease_P 0.51 44.0 3.92e-01 100.0% 67.0%
4958002 12.5.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related 0.51 42.0 3.80e-01 97.6% 73.6%
3816078 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.51 42.0 3.76e-01 92.7% 100.0%
D2 medium residues 53-108
PDB
Domain cluster: representative
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2bskB00 1.10.287.810 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Mitochondrial import inner membrane translocase subunit tim13 like domains 0.70 54.0 5.17e-01 92.9% 72.3%
2iexA02 1.10.12.10 Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 0.58 40.0 4.21e-01 80.4% 80.4%
2jx4A01 6.10.140.460 Special › Helix non-globular › Helix Hairpins › 0.50 38.0 3.98e-01 83.9% 100.0%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2640871 4163.1.2.1 ↗ alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF2 C-terminal domain-like › Sld5 0.70 56.0 4.41e-01 87.5% 43.5%
3802251 605.8.1.9 ↗ alpha duplicates or obligate multimers › ROP-like › BAS1536-like › BAS1536-like › 2TM_P5A-ATPase 0.69 57.0 5.58e-01 91.1% 83.3%
4514735 1049.2.1.4 ↗ alpha duplicates or obligate multimers › Baseplate wedge protein gp7 helical domain-like › Baseplate wedge protein gp6 helical domain › Baseplate wedge protein gp6 helical domain › Baseplate_J 0.67 60.0 4.12e-01 100.0% 32.6%
4984968 101.1.2.751 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF6293_C 0.54 42.0 3.49e-01 80.4% 62.2%