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NC_073439.1__YP_010752990.1__QDW27_gp47__00047

Bact-Vir

NC_073439.1__YP_010752990.1__QDW27_gp47__00047

Identity

Accession:
NC_073439 ↗
Kingdom:
phage

Quality

88.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Dismasvirus› Microbacterium_phage_IndyLu

TaxID: 2885152

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-51
PDB
Domain cluster: representative
CATH (39)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4b43A01 1.10.10.2480 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.78 67.0 5.90e-01 100.0% 75.0%
5i41B00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.76 64.0 5.76e-01 100.0% 80.6%
3gp4B00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.75 64.0 4.64e-01 100.0% 40.0%
3hh0A01 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.74 64.0 5.50e-01 100.0% 84.7%
3gpvA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.73 64.0 4.78e-01 100.0% 48.7%
1r8eA02 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.72 61.0 5.30e-01 100.0% 84.9%
1wxqA02 1.10.8.470 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.70 61.0 4.89e-01 100.0% 62.2%
1aipH03 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.70 52.0 5.03e-01 97.8% 73.1%
4b8vA03 3.10.350.10 Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain 0.68 53.0 5.19e-01 95.6% 81.6%
1x9nA01 1.10.3260.10 Mainly Alpha › Orthogonal Bundle › DNA ligase i, domain 1 › DNA ligase, ATP-dependent, N-terminal domain 0.67 53.0 3.21e-01 86.7% 29.1%
2mtzA01 3.10.350.10 Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain 0.67 51.0 4.95e-01 100.0% 76.0%
5c8qB02 3.10.350.10 Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain 0.66 52.0 5.21e-01 93.3% 87.0%
3g7dA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.65 46.0 3.76e-01 75.6% 61.6%
1xb2B01 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.65 46.0 4.40e-01 97.8% 63.3%
2lbcA02 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.64 46.0 4.51e-01 97.8% 69.8%
1tr8A02 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.64 47.0 4.90e-01 97.8% 92.3%
3qo8A01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.64 46.0 3.50e-01 77.8% 95.3%
4bfmA00 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.64 44.0 2.66e-01 73.3% 86.9%
1mwrA03 3.30.1390.30 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L30; Chain: A, › Penicillin-binding protein 2a; domain 3 0.62 49.0 4.20e-01 97.8% 55.7%
4bjqA00 1.10.150.770 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.61 46.0 3.83e-01 80.0% 76.9%
1a5tA02 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.60 45.0 4.72e-01 93.3% 92.5%
7vjmB01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.59 50.0 4.43e-01 95.6% 64.1%
1zgdA00 3.20.20.100 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › NADP-dependent oxidoreductase domain 0.59 46.0 2.85e-01 91.1% 80.2%
1vpwA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.59 43.0 4.04e-01 80.0% 75.4%
1v1gA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.58 48.0 3.26e-01 97.8% 94.1%
3p7nA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 41.0 3.51e-01 75.6% 55.6%
1te2A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.56 43.0 3.92e-01 100.0% 59.7%
2ltuA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.56 42.0 3.97e-01 91.1% 71.0%
3mlfE00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.55 48.0 3.87e-01 97.8% 57.0%
2r1jL00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.55 48.0 4.20e-01 97.8% 72.7%
3otnA00 1.25.40.390 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.55 40.0 2.34e-01 88.9% 7.9%
3h5tA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.54 42.0 4.20e-01 86.7% 91.5%
3bs3A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.54 47.0 4.30e-01 97.8% 80.0%
1kblA05 1.20.80.30 Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › 0.53 43.0 3.57e-01 97.8% 64.0%
2k77A00 1.10.1780.10 Mainly Alpha › Orthogonal Bundle › Double Clp-N motif › Clp, N-terminal domain 0.52 42.0 3.10e-01 100.0% 73.8%
1uxdA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.52 40.0 3.69e-01 86.7% 74.6%
6v7xB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 39.0 3.70e-01 84.4% 75.0%
4kt7A00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.51 40.0 2.68e-01 97.8% 91.2%
2oivA00 3.40.395.10 Alpha Beta › 3-Layer(aba) Sandwich › Adenoviral Proteinase; Chain › Adenoviral Proteinase; Chain A 0.50 37.0 2.77e-01 100.0% 81.2%
ECOD (64)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4051544 101.1.9.8 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N 0.80 68.0 6.19e-01 95.6% 80.0%
4097210 101.1.9.8 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N 0.80 67.0 6.36e-01 95.6% 87.3%
4322705 101.1.9.8 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N 0.80 69.0 6.01e-01 100.0% 67.1%
4158216 101.1.9.8 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N 0.79 68.0 6.26e-01 100.0% 85.0%
3284690 3601.1.1.0 ↗ alpha complex topology › Class III adenylyl cyclases regulatory domain › Class III adenylyl cyclases regulatory domain › Class III adenylyl cyclases regulatory domain 0.79 70.0 4.80e-01 100.0% 36.7%
3290494 101.1.9.8 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N 0.79 67.0 6.53e-01 97.8% 94.0%
4210562 101.1.9.8 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N 0.78 66.0 6.07e-01 97.8% 83.3%
5039245 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.78 52.0 5.06e-01 71.1% 62.0%
4389062 101.1.9.8 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N 0.78 67.0 6.19e-01 100.0% 86.7%
4142235 101.1.9.8 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N 0.77 66.0 5.14e-01 100.0% 47.0%
4278221 101.1.9.8 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N 0.76 65.0 5.87e-01 100.0% 72.3%
4100614 101.1.9.8 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N 0.76 65.0 6.17e-01 97.8% 90.9%
4657200 7526.1.1.0 ↗ a/b three-layered sandwiches › Initiation factor IF2/eIF5b, domain 3 › Initiation factor IF2/eIF5b, domain 3 › Initiation factor IF2/eIF5b, domain 3 0.76 65.0 3.72e-01 100.0% 10.0%
4352200 101.1.9.8 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N 0.76 66.0 5.74e-01 100.0% 67.1%
4408493 101.1.9.8 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N 0.76 66.0 6.41e-01 100.0% 94.0%
4456842 101.1.9.8 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N 0.76 65.0 6.00e-01 100.0% 85.0%
4553393 101.1.9.8 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N 0.76 64.0 6.03e-01 97.8% 83.6%
4551162 101.1.9.8 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N 0.76 65.0 5.69e-01 100.0% 67.1%
4221363 101.1.9.8 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N 0.76 64.0 5.64e-01 100.0% 67.1%
2876157 101.1.9.105 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › PF30176 0.75 64.0 6.13e-01 100.0% 100.0%
4130472 101.1.9.8 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N 0.75 64.0 5.77e-01 100.0% 73.8%
4630854 101.1.9.8 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N 0.75 65.0 6.36e-01 100.0% 96.0%
4375269 101.1.9.8 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N 0.75 64.0 5.73e-01 100.0% 72.3%
None — 0.75 63.0 3.97e-01 97.8% 18.8%
4117084 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.75 63.0 4.98e-01 100.0% 56.0%
4433058 101.1.9.8 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N 0.75 62.0 6.26e-01 95.6% 100.0%
3366705 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.75 63.0 5.68e-01 100.0% 73.8%
3164063 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.74 65.0 5.62e-01 100.0% 87.1%
3953586 103.5.1.0 ↗ alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like 0.73 62.0 6.03e-01 93.3% 86.0%
3948487 101.1.9.82 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.73 62.0 4.51e-01 100.0% 47.4%
4668451 103.5.1.2 ↗ alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like › DmpG_comm 0.72 57.0 5.98e-01 95.6% 100.0%
4390858 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.72 61.0 5.96e-01 97.8% 98.0%
3942056 103.5.1.0 ↗ alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like 0.72 62.0 6.28e-01 100.0% 97.8%
3960386 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.72 59.0 5.41e-01 93.3% 91.7%
4090636 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.72 59.0 5.26e-01 100.0% 78.6%
3325524 101.1.9.8 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N 0.72 59.0 5.66e-01 97.8% 85.5%
4470278 101.1.9.82 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.71 58.0 4.45e-01 97.8% 47.0%
2979123 143.2.1.0 ↗ alpha arrays › PABP domain-like › Ribosomal protein L20 › Ribosomal protein L20 0.71 56.0 4.30e-01 93.3% 45.3%
146195 3764.1.1.0 ↗ alpha arrays › Repressor activator protein 1 (RAP1) helical bundle domain › Repressor activator protein 1 (RAP1) helical bundle domain › Repressor activator protein 1 (RAP1) helical bundle domain 0.70 53.0 5.16e-01 97.8% 75.0%
4319059 103.5.1.2 ↗ alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like › DmpG_comm 0.69 55.0 5.04e-01 95.6% 69.8%
5035482 102.2.1.0 ↗ alpha arrays › HhH/H2TH › H2TH › H2TH 0.68 54.0 4.99e-01 100.0% 72.3%
5016168 102.2.1.0 ↗ alpha arrays › HhH/H2TH › H2TH › H2TH 0.68 55.0 4.75e-01 100.0% 71.2%
3472431 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.67 45.0 4.73e-01 71.1% 90.0%
4993942 3009.1.1.14 ↗ alpha arrays › Insertion subdomain in DsbA-like › Insertion subdomain in DsbA-like › Insertion subdomain in DsbA-like › DUF2240 0.67 56.0 5.42e-01 93.3% 92.0%
3957229 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.66 56.0 5.14e-01 97.8% 93.3%
5053068 130.1.1.3 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Rho_N 0.65 42.0 4.39e-01 95.6% 75.0%
3592099 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.64 51.0 4.74e-01 100.0% 75.4%
3172891 130.1.1.16 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Ish1 0.64 43.0 4.22e-01 88.9% 64.0%
3952601 103.12.1.1 ↗ alpha arrays › RuvA-C › ANTAR domain › ANTAR domain › ANTAR 0.64 52.0 4.63e-01 97.8% 98.6%
3611122 130.1.1.32 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP_RNF34_RFFL (DEPRECATED) 0.64 44.0 4.15e-01 71.1% 65.5%
3198528 130.1.1.16 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Ish1 0.63 46.0 4.35e-01 80.0% 74.5%
3881311 130.1.1.32 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP_RNF34_RFFL (DEPRECATED) 0.61 45.0 4.54e-01 77.8% 82.2%
3191284 130.1.1.16 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Ish1 0.61 44.0 4.31e-01 77.8% 74.0%
4428371 130.1.1.3 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Rho_N 0.60 43.0 4.34e-01 75.6% 82.2%
3594075 308.1.1.0 ↗ a+b two layers › ClpS-like › ClpS-related › ClpS-related 0.58 38.0 3.29e-01 91.1% 37.5%
4236132 3254.1.1.1 ↗ alpha arrays › helical domain in flagellar biosynthesis protein flhA › helical domain in flagellar biosynthesis protein flhA › helical domain in flagellar biosynthesis protein flhA › FHIPEP 0.57 45.0 3.83e-01 100.0% 52.2%
3841729 1008.1.1.0 ↗ alpha bundles › BRCC36 C-terminal helical domain › BRCC36 C-terminal helical domain › BRCC36 C-terminal helical domain 0.57 43.0 3.62e-01 91.1% 90.0%
3703373 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.56 44.0 2.96e-01 100.0% 35.6%
3407070 192.4.1.0 ↗ alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) 0.56 41.0 3.43e-01 80.0% 57.5%
3224502 101.1.1.75 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_48 0.56 38.0 3.60e-01 71.1% 80.0%
3166324 148.1.3.334 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › PF27180 0.54 42.0 3.33e-01 100.0% 75.0%
3299951 376.1.1.8 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › U-box 0.53 39.0 3.16e-01 82.2% 87.4%
3480164 108.1.1.96 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_6, EF-hand_7 0.51 42.0 3.69e-01 100.0% 73.3%
5062669 632.23.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Helical linker domain in nicking endonuclease N.BspD6I › Helical linker domain in nicking endonuclease N.BspD6I 0.50 41.0 3.61e-01 97.8% 80.8%