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NC_073454.1__YP_010754026.1__QDW46_gp47__00047

Bact-Vir

NC_073454.1__YP_010754026.1__QDW46_gp47__00047

Identity

Accession:
NC_073454 ↗
Kingdom:
phage

Quality

68.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 17-71
PDB
Domain cluster: representative
CATH (49)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4c5eC02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.71 56.0 4.71e-01 100.0% 50.0%
3e1sA04 2.30.30.940 Mainly Beta › Roll › SH3 type barrels. › 0.71 60.0 5.60e-01 100.0% 76.8%
2mc2A00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.70 62.0 4.16e-01 100.0% 95.1%
5i4eA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.70 50.0 5.32e-01 98.2% 91.3%
1b7tA02 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.69 51.0 5.25e-01 100.0% 84.6%
2eifA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.69 46.0 4.57e-01 70.9% 94.9%
3h8zA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 50.0 4.81e-01 100.0% 68.8%
6bogA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 52.0 5.36e-01 100.0% 90.4%
1sf9A02 2.30.30.340 Mainly Beta › Roll › SH3 type barrels. › Hypothetical protein YfhH like domains 0.68 48.0 4.87e-01 100.0% 77.8%
4m4zA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 52.0 5.46e-01 98.2% 100.0%
3goxA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 52.0 5.31e-01 100.0% 94.1%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 49.0 4.52e-01 100.0% 60.3%
2ew0A00 3.40.1740.10 Alpha Beta › 3-Layer(aba) Sandwich › VC0467-like › VC0467-like 0.66 55.0 3.97e-01 100.0% 80.0%
1m9sA03 2.30.30.170 Mainly Beta › Roll › SH3 type barrels. › 0.65 56.0 5.12e-01 100.0% 92.0%
1ib8A02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.65 53.0 5.03e-01 100.0% 77.6%
3hrsA02 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.65 55.0 5.04e-01 100.0% 81.6%
7afrX02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.65 50.0 4.93e-01 100.0% 80.0%
4iimA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 56.0 5.60e-01 98.2% 94.7%
2mysA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.65 46.0 4.85e-01 100.0% 89.6%
2e70A00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.64 47.0 4.37e-01 100.0% 62.0%
2x2sC00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.64 53.0 4.05e-01 100.0% 95.3%
2jngA00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.64 51.0 4.71e-01 100.0% 67.5%
2cudA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 54.0 4.86e-01 100.0% 68.4%
2gs5A01 3.40.1740.10 Alpha Beta › 3-Layer(aba) Sandwich › VC0467-like › VC0467-like 0.63 53.0 3.77e-01 100.0% 73.9%
1g29103 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.63 44.0 4.22e-01 74.5% 98.5%
1x6gA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 53.0 4.76e-01 100.0% 69.1%
2v1qA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 54.0 5.27e-01 100.0% 93.3%
1lckA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 53.0 5.22e-01 100.0% 91.5%
2ct4A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 54.0 5.02e-01 100.0% 82.9%
2kxcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 52.0 4.96e-01 98.2% 88.1%
4ytlA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.61 46.0 4.71e-01 100.0% 94.0%
1x6bA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 52.0 5.00e-01 100.0% 84.4%
2do3A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.61 45.0 4.59e-01 100.0% 90.2%
3pieC09 2.30.30.750 Mainly Beta › Roll › SH3 type barrels. › 0.61 48.0 4.23e-01 100.0% 67.7%
1w1hD00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 52.0 3.98e-01 100.0% 47.4%
3pnnA00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.61 46.0 2.96e-01 100.0% 15.9%
2id0A04 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.61 49.0 4.20e-01 89.1% 98.9%
3n7cA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 50.0 4.13e-01 100.0% 75.0%
2dl5A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 49.0 4.53e-01 100.0% 74.4%
2ky9A01 2.30.30.1130 Mainly Beta › Roll › SH3 type barrels. › 0.59 49.0 4.74e-01 100.0% 83.6%
2rqrA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 50.0 4.01e-01 100.0% 46.2%
4b9dB01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.59 49.0 4.15e-01 92.7% 75.3%
2ysiA01 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.59 34.0 3.98e-01 92.7% 93.9%
2ckkA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.58 47.0 4.70e-01 100.0% 93.0%
8aimG01 3.10.450.20 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Bacteriophage PBS2, uracil-glycosylase inhibitor 0.57 45.0 4.09e-01 92.7% 71.6%
2hbpA00 2.30.30.700 Mainly Beta › Roll › SH3 type barrels. › SLA1 homology domain 1 0.56 42.0 4.10e-01 100.0% 72.7%
1awoA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 43.0 4.35e-01 100.0% 94.7%
7u32F02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.54 40.0 4.07e-01 100.0% 96.1%
1w0pA03 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 44.0 3.14e-01 100.0% 58.8%
ECOD (67)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4997767 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.77 52.0 5.62e-01 98.2% 84.4%
5033600 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.76 53.0 5.59e-01 89.1% 81.6%
4011604 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.75 60.0 5.44e-01 100.0% 65.3%
4975150 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 55.0 5.35e-01 100.0% 73.3%
4990212 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 53.0 5.38e-01 100.0% 78.2%
5044373 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 53.0 5.18e-01 100.0% 71.7%
4947995 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.72 51.0 5.15e-01 100.0% 74.5%
None 0.71 53.0 2.89e-01 100.0% 5.1%
4015071 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 54.0 5.03e-01 100.0% 65.7%
3225762 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.70 61.0 5.58e-01 100.0% 82.7%
5033075 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 50.0 5.02e-01 100.0% 74.5%
None 0.70 52.0 2.87e-01 100.0% 5.6%
3586487 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 51.0 4.49e-01 100.0% 51.8%
3486495 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 56.0 3.91e-01 100.0% 28.0%
4890270 4.1.1.33 beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.69 50.0 5.10e-01 100.0% 81.5%
5038340 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.68 55.0 4.96e-01 100.0% 65.3%
3554026 4.1.1.233 beta barrels › SH3 › SH3 › SH3 › Myosin_VII_N 0.68 55.0 5.36e-01 100.0% 83.3%
1391581 4.1.1.34 beta barrels › SH3 › SH3 › SH3 › MBT 0.68 51.0 4.37e-01 100.0% 49.5%
3510526 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 53.0 5.31e-01 100.0% 87.3%
3671986 4.1.1.238 beta barrels › SH3 › SH3 › SH3 › KOW5_SPT5 0.68 50.0 4.65e-01 100.0% 62.9%
3631165 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 59.0 5.16e-01 100.0% 72.9%
3929373 4.1.1.233 beta barrels › SH3 › SH3 › SH3 › Myosin_VII_N 0.66 55.0 5.36e-01 100.0% 85.0%
3716426 6.1.1.0 beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil 0.66 55.0 4.15e-01 98.2% 81.4%
5025079 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 49.0 4.97e-01 100.0% 85.5%
3535278 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 48.0 4.75e-01 100.0% 75.0%
4962256 101.1.2.937 alpha arrays › HTH › HTH › winged helix domain › PF25943 0.65 57.0 4.55e-01 100.0% 61.8%
3559865 6.1.1.0 beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil 0.65 55.0 4.39e-01 100.0% 94.9%
3896519 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 53.0 5.48e-01 100.0% 100.0%
3484618 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.64 56.0 5.13e-01 100.0% 78.7%
3356605 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.64 56.0 4.80e-01 100.0% 77.8%
3841414 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.64 53.0 4.91e-01 100.0% 72.9%
3922426 4.1.1.363 beta barrels › SH3 › SH3 › SH3 › Agenet, Tudor_FRX1 0.64 52.0 4.13e-01 100.0% 42.5%
3517651 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 52.0 4.81e-01 100.0% 72.0%
3482646 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 55.0 3.79e-01 100.0% 29.0%
4210485 4.1.1.303 beta barrels › SH3 › SH3 › SH3 › SH3_retrovirus 0.63 49.0 4.72e-01 100.0% 73.8%
4101587 4.1.1.140 beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.63 54.0 4.45e-01 100.0% 62.9%
1746358 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 54.0 4.42e-01 100.0% 67.6%
3936885 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 49.0 4.69e-01 100.0% 73.8%
4238585 375.1.4.1 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain › PyrI_C 0.63 52.0 5.25e-01 92.7% 100.0%
3719783 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 54.0 4.59e-01 100.0% 74.5%
4110072 375.1.4.1 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain › PyrI_C 0.62 52.0 5.28e-01 96.4% 100.0%
4117297 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 52.0 4.92e-01 100.0% 78.6%
3765126 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.62 52.0 5.29e-01 100.0% 98.2%
3268160 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 53.0 4.61e-01 100.0% 75.6%
3759446 4.1.1.73 beta barrels › SH3 › SH3 › SH3 › Cul7 0.62 50.0 4.38e-01 100.0% 57.8%
3278853 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 50.0 4.88e-01 98.2% 83.1%
3520654 4.1.1.187 beta barrels › SH3 › SH3 › SH3 › DIRP 0.62 47.0 3.58e-01 100.0% 32.0%
3514556 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 49.0 4.60e-01 100.0% 71.4%
2726885 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 52.0 4.22e-01 100.0% 67.3%
158943 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.61 52.0 4.68e-01 100.0% 68.4%
3591670 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 48.0 4.89e-01 89.1% 89.1%
3182025 4.1.1.475 beta barrels › SH3 › SH3 › SH3 › PF26640 0.61 55.0 4.09e-01 100.0% 46.7%
3520308 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 52.0 4.43e-01 100.0% 58.9%
3672735 4.1.1.303 beta barrels › SH3 › SH3 › SH3 › SH3_retrovirus 0.60 48.0 4.60e-01 100.0% 78.5%
3469800 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.60 50.0 4.47e-01 98.2% 66.3%
3241890 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 51.0 4.28e-01 100.0% 56.0%
3479037 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 50.0 4.49e-01 100.0% 67.5%
4987744 4.11.1.0 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.59 47.0 3.68e-01 100.0% 37.8%
3923813 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.59 51.0 4.92e-01 100.0% 84.6%
3511200 389.1.2.0 few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain 0.59 46.0 4.08e-01 98.2% 57.6%
3486061 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.59 48.0 3.26e-01 94.5% 44.0%
3802925 4.1.1.296 beta barrels › SH3 › SH3 › SH3 › TDBD 0.59 49.0 4.45e-01 100.0% 95.0%
3170688 4.1.1.303 beta barrels › SH3 › SH3 › SH3 › SH3_retrovirus 0.58 46.0 4.55e-01 100.0% 85.0%
4625654 4.1.1.445 beta barrels › SH3 › SH3 › SH3 › Spore_GerQ 0.58 48.0 4.40e-01 100.0% 70.7%
3703933 4.1.1.237 beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 0.56 47.0 4.55e-01 100.0% 84.6%
4014269 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 42.0 2.54e-01 100.0% 35.4%
3924974 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.50 41.0 3.35e-01 100.0% 70.8%