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NC_073463.1__YP_010754779.1__QEH37_gp50__00050

Bact-Vir

NC_073463.1__YP_010754779.1__QEH37_gp50__00050

Identity

Accession:
NC_073463 ↗
Kingdom:
phage

Quality

85.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-36
PDB
Domain cluster: representative
CATH (36)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7sz2A01 3.30.720.50 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.74 53.0 4.00e-01 88.9% 30.4%
1l1oC02 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.74 59.0 5.85e-01 100.0% 86.8%
3k8rA01 3.30.2020.40 Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › Uncharacterised protein PF10387, DUF2442 0.71 54.0 4.60e-01 91.7% 92.6%
3u50C02 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.70 53.0 5.37e-01 100.0% 88.6%
4ddpA00 1.10.418.40 Mainly Alpha › Orthogonal Bundle › Actin-binding Protein, T-fimbrin; domain 1 › Autophagy protein 6/Beclin 1 0.69 50.0 3.23e-01 86.1% 92.3%
2qpzA00 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.68 52.0 4.00e-01 100.0% 45.6%
4bbrM00 1.10.472.170 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › 0.67 48.0 3.13e-01 83.3% 17.6%
3s8iA00 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.67 57.0 3.94e-01 100.0% 85.5%
2ysiA01 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.66 47.0 4.88e-01 97.2% 84.8%
4msxA01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.66 51.0 3.90e-01 91.7% 90.3%
3igmA00 1.20.5.2050 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.66 54.0 4.68e-01 91.7% 58.9%
1ej6A04 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.66 50.0 3.09e-01 86.1% 93.5%
3gv4A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.65 51.0 3.82e-01 91.7% 86.9%
4a1fB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.65 50.0 3.00e-01 91.7% 89.6%
2nqlA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.65 47.0 3.09e-01 91.7% 17.3%
1d0qA00 3.90.580.10 Alpha Beta › Alpha-Beta Complex › DNA Primase; Chain A › Zinc finger, CHC2-type domain 0.65 50.0 3.81e-01 94.4% 39.2%
3m7nA03 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.64 47.0 4.80e-01 94.4% 91.2%
2a90A01 3.30.720.50 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.64 49.0 3.62e-01 88.9% 31.6%
6mkbA00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.63 53.0 3.46e-01 97.2% 93.1%
2i50A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.63 48.0 3.48e-01 91.7% 90.2%
3iylW04 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.62 47.0 2.90e-01 86.1% 94.0%
1zbtA02 3.30.70.1660 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.62 50.0 3.34e-01 100.0% 72.4%
2kxqA01 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.61 44.0 4.50e-01 97.2% 100.0%
1m0wA04 3.40.50.1760 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glutathione synthase, substrate-binding domain superfamily, eukaryotic 0.61 45.0 3.33e-01 94.4% 73.6%
1ztpA01 3.30.760.10 Alpha Beta › 2-Layer Sandwich › RNA Cap, Translation Initiation Factor Eif4e › RNA Cap, Translation Initiation Factor Eif4e 0.60 44.0 2.77e-01 80.6% 54.7%
2nutA02 2.30.30.380 Mainly Beta › Roll › SH3 type barrels. › Zn-finger domain of Sec23/24 0.59 45.0 4.08e-01 97.2% 67.2%
1m2vB03 2.30.30.380 Mainly Beta › Roll › SH3 type barrels. › Zn-finger domain of Sec23/24 0.59 46.0 4.06e-01 97.2% 62.9%
2nutB02 2.30.30.380 Mainly Beta › Roll › SH3 type barrels. › Zn-finger domain of Sec23/24 0.59 46.0 4.01e-01 94.4% 58.1%
1twfB08 3.90.1800.10 Alpha Beta › Alpha-Beta Complex › DCoH-like › RNA polymerase alpha subunit dimerisation domain 0.58 42.0 3.53e-01 100.0% 40.0%
1njkA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.57 47.0 3.30e-01 100.0% 61.7%
2mnjB00 2.60.40.4160 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 44.0 3.53e-01 94.4% 70.5%
4gkpB00 3.40.850.20 Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › 0.57 45.0 2.80e-01 100.0% 82.7%
2o0aA00 3.40.850.20 Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › 0.57 46.0 2.82e-01 100.0% 78.8%
7b2sA01 2.60.120.920 Mainly Beta › Sandwich › Jelly Rolls › SPRY domain 0.55 39.0 2.68e-01 75.0% 57.4%
5u8kA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 41.0 3.07e-01 100.0% 30.8%
1dp4C02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.54 42.0 2.67e-01 91.7% 17.6%
ECOD (78)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5043237 375.1.1.93 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › A2L_zn_ribbon 0.89 68.0 7.17e-01 86.1% 100.0%
5062906 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.84 62.0 5.30e-01 83.3% 50.0%
5043002 375.1.1.37 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TF_Zn_Ribbon 0.80 67.0 6.34e-01 100.0% 82.2%
5036301 375.1.1.37 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TF_Zn_Ribbon 0.80 66.0 6.49e-01 97.2% 90.0%
5075345 4294.1.1.0 few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like 0.79 64.0 5.94e-01 100.0% 74.0%
3260511 386.1.1.71 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › SURF2 0.78 60.0 5.19e-01 97.2% 54.5%
3598119 330.3.1.0 a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like 0.78 55.0 4.48e-01 75.0% 42.9%
4948064 375.10.1.6 few secondary structure elements › Rubredoxin-like › Zinc finger domain of DNA polymerase-alpha › Zinc finger domain of DNA polymerase-alpha › Zn_Ribbon_TF 0.77 62.0 5.78e-01 100.0% 74.0%
5067465 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.76 64.0 5.68e-01 100.0% 76.4%
4995759 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.76 61.0 4.92e-01 100.0% 51.2%
3589899 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.76 61.0 5.83e-01 100.0% 82.2%
3882068 386.1.1.4 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED 0.76 59.0 5.30e-01 100.0% 62.0%
3750942 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.75 53.0 4.80e-01 77.8% 54.0%
3711220 4357.1.1.1 beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.75 51.0 4.22e-01 88.9% 40.0%
3397452 386.1.1.4 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED 0.74 58.0 4.89e-01 100.0% 51.7%
4056467 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.74 60.0 5.15e-01 100.0% 56.7%
3643546 902.1.1.0 few secondary structure elements › Amb V allergen › Amb V allergen › Amb V allergen 0.74 52.0 5.34e-01 97.2% 74.3%
4962043 386.1.1.422 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › PF26266 0.72 58.0 5.01e-01 97.2% 58.2%
4028249 330.3.1.0 a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like 0.72 52.0 4.58e-01 77.8% 53.7%
3415669 6.1.1.4 beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › Ricin_B_lectin 0.72 56.0 3.87e-01 88.9% 57.6%
4061049 375.1.1.37 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TF_Zn_Ribbon 0.71 54.0 5.35e-01 88.9% 85.0%
5025138 101.1.10.80 alpha arrays › HTH › HTH › Cyclin-like › Zn_Ribbon_TF 0.71 54.0 3.46e-01 88.9% 17.0%
3519023 3964.1.1.1 beta meanders › OCRE domain of RBM10 › OCRE domain of RBM10 › OCRE domain of RBM10 › OCRE 0.71 50.0 3.89e-01 75.0% 33.8%
4966301 375.1.1.320 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIB 0.71 51.0 5.22e-01 83.3% 91.4%
4944100 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.71 52.0 5.15e-01 88.9% 80.0%
4263170 375.1.1.37 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TF_Zn_Ribbon 0.70 54.0 4.47e-01 88.9% 48.6%
3261011 375.1.1.85 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Auto_anti-p27 0.70 55.0 5.15e-01 100.0% 70.0%
3992934 3964.1.1.1 beta meanders › OCRE domain of RBM10 › OCRE domain of RBM10 › OCRE domain of RBM10 › OCRE 0.70 55.0 4.59e-01 94.4% 49.2%
3222865 375.1.1.37 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TF_Zn_Ribbon 0.70 52.0 5.17e-01 88.9% 82.5%
5023273 4294.1.1.12 few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like › Zn_Ribbon_TF 0.69 52.0 4.82e-01 88.9% 68.0%
3758626 375.1.1.37 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TF_Zn_Ribbon 0.69 52.0 4.44e-01 88.9% 52.3%
4996201 375.1.1.37 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TF_Zn_Ribbon 0.69 52.0 4.94e-01 88.9% 80.0%
4053431 375.1.1.37 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TF_Zn_Ribbon 0.69 52.0 4.67e-01 88.9% 80.0%
3808970 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.69 52.0 4.81e-01 88.9% 66.0%
4943134 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.68 49.0 5.00e-01 88.9% 88.6%
3412674 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.68 53.0 4.23e-01 100.0% 57.8%
3935829 386.1.1.4 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED 0.68 51.0 4.45e-01 100.0% 52.5%
3401727 4.12.1.0 beta barrels › SH3 › Methuselah ectodomain › Methuselah ectodomain 0.68 58.0 4.10e-01 100.0% 50.4%
3503411 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.68 52.0 4.96e-01 97.2% 71.1%
3102541 7592.1.1.8 a/b three-layered sandwiches › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains › CARF_Card1 0.68 53.0 3.48e-01 91.7% 86.9%
3537939 386.1.1.316 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › PF30902 0.67 52.0 4.97e-01 97.2% 71.1%
3488426 375.1.1.37 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TF_Zn_Ribbon 0.67 51.0 4.91e-01 91.7% 73.3%
3098421 330.3.1.0 a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like 0.67 48.0 4.67e-01 75.0% 69.8%
3936215 386.1.1.242 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2, zf-C2H2_16 0.67 46.0 3.93e-01 97.2% 40.0%
4991697 2.1.1.7 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 0.66 56.0 4.00e-01 100.0% 50.0%
3039309 2003.1.5.91 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Reovirus_L2_MT2 0.66 49.0 3.07e-01 86.1% 94.7%
4275625 375.1.1.47 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › BshC 0.66 53.0 4.71e-01 100.0% 61.7%
4261546 330.3.1.0 a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like 0.66 47.0 3.92e-01 77.8% 42.5%
4001570 330.3.1.0 a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like 0.66 46.0 3.80e-01 77.8% 42.7%
3171207 3016.1.1.7 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Cys_Met_Meta_PP 0.66 53.0 3.34e-01 91.7% 82.6%
3417232 63.1.1.0 beta barrels › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain 0.66 53.0 3.87e-01 100.0% 96.7%
3205535 330.3.1.0 a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like 0.65 47.0 3.81e-01 77.8% 39.7%
3704287 4357.1.1.0 beta barrels › WWE domain › WWE domain › WWE domain 0.65 48.0 4.20e-01 100.0% 49.2%
3556873 330.3.1.0 a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like 0.65 47.0 3.74e-01 77.8% 38.7%
3619550 376.1.1.5 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-UBP 0.65 50.0 3.67e-01 94.4% 92.2%
4946106 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.65 52.0 3.08e-01 100.0% 11.8%
3179779 330.3.1.0 a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like 0.64 47.0 3.61e-01 77.8% 34.4%
5051531 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.64 47.0 4.65e-01 100.0% 80.0%
4030189 330.3.1.0 a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like 0.64 46.0 4.04e-01 77.8% 48.3%
4287145 375.1.1.37 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TF_Zn_Ribbon 0.64 48.0 4.28e-01 88.9% 56.7%
3238220 376.1.6.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain › IBR 0.64 49.0 4.27e-01 97.2% 56.9%
3330763 375.1.1.37 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TF_Zn_Ribbon 0.63 47.0 4.67e-01 91.7% 87.5%
4260807 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.63 49.0 4.22e-01 100.0% 67.1%
4474519 330.3.1.0 a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like 0.62 44.0 3.90e-01 77.8% 51.7%
3229589 376.1.4.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › Ariadne-1 protein homolog 0.61 45.0 4.52e-01 94.4% 82.5%
1408245 2003.1.10.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › PreATP-grasp domain 0.61 44.0 3.37e-01 91.7% 84.1%
3843142 376.1.1.5 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-UBP 0.61 45.0 3.24e-01 91.7% 80.0%
4888120 4043.1.1.2 a+b complex topology › C-terminal domain in beta subunit of DNA dependent RNA-polymerase › C-terminal domain in beta subunit of DNA dependent RNA-polymerase › C-terminal domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_7 0.61 42.0 3.44e-01 77.8% 33.7%
3977942 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 50.0 3.39e-01 100.0% 59.3%
3995904 375.1.1.30 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-Sec23_Sec24 0.60 47.0 3.64e-01 94.4% 43.0%
3593533 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.59 49.0 3.66e-01 97.2% 57.0%
3577814 376.1.1.5 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-UBP 0.59 47.0 3.98e-01 100.0% 78.6%
3403338 386.1.1.20 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-met 0.59 50.0 3.95e-01 97.2% 52.0%
3178184 2004.1.1.212 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Microtub_bd 0.57 48.0 2.83e-01 100.0% 73.8%
3891437 376.1.6.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain › IBR 0.57 43.0 3.97e-01 97.2% 61.8%
3422037 376.1.1.5 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-UBP 0.55 47.0 3.65e-01 97.2% 57.6%
3873729 376.1.4.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › Ariadne-1 protein homolog › IBR 0.54 37.0 3.45e-01 97.2% 52.9%
3686965 376.1.6.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain › IBR 0.54 41.0 3.79e-01 94.4% 76.4%