←Back to structures
NC_073468.1__YP_010755041.1__QEH42_gp010__00010
Bact-VirNC_073468.1__YP_010755041.1__QEH42_gp010__00010
Identity
- Accession:
- NC_073468 ↗
- Kingdom:
- phage
Quality
69.0
mean pLDDT
Taxonomy
TaxID: 2885983
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 23-82
Domain cluster:
representative
CATH (52)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3wd6A02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.81 | 67.0 | 5.31e-01 | 91.7% | 45.8% |
| 3qo8A01 | 1.10.287.40 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain | 0.81 | 74.0 | 6.05e-01 | 100.0% | 59.4% |
| 2wmmA01 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.81 | 54.0 | 5.91e-01 | 70.0% | 100.0% |
| 4abmD00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.79 | 72.0 | 6.59e-01 | 100.0% | 85.7% |
| 3nrxA00 | 1.20.58.1520 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.78 | 69.0 | 5.46e-01 | 100.0% | 48.8% |
| 1z0pA00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.78 | 67.0 | 6.32e-01 | 100.0% | 78.1% |
| 5dqqA01 | 1.20.120.350 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C | 0.78 | 64.0 | 5.00e-01 | 91.7% | 47.7% |
| 2js5A00 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.77 | 64.0 | 6.04e-01 | 96.7% | 76.1% |
| 8a1gC01 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.75 | 66.0 | 4.71e-01 | 100.0% | 33.7% |
| 2ycdA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.75 | 65.0 | 5.29e-01 | 100.0% | 52.1% |
| 4ceiA03 | 6.10.250.2380 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.75 | 67.0 | 5.42e-01 | 100.0% | 93.8% |
| 1jalA03 | 1.10.150.300 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Obg-related GTPase Ych/YyaF, coiled-coil domain | 0.75 | 64.0 | 5.79e-01 | 100.0% | 70.4% |
| 4k0dA00 | 1.20.120.1730 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.74 | 64.0 | 4.90e-01 | 98.3% | 53.1% |
| 4oydB00 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.74 | 65.0 | 5.19e-01 | 96.7% | 88.9% |
| 1ku9A02 | 1.10.287.450 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.74 | 62.0 | 6.11e-01 | 91.7% | 92.2% |
| 3d36B02 | 1.10.287.130 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain | 0.74 | 60.0 | 6.06e-01 | 90.0% | 88.5% |
| 7nc3F01 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.74 | 60.0 | 4.93e-01 | 91.7% | 92.1% |
| 3k3oA02 | 1.20.58.1360 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.73 | 53.0 | 4.76e-01 | 78.3% | 60.7% |
| 3txsC01 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.73 | 63.0 | 5.92e-01 | 100.0% | 81.3% |
| 1cunA01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.73 | 61.0 | 5.21e-01 | 100.0% | 56.9% |
| 4kb2A01 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.72 | 62.0 | 5.05e-01 | 95.0% | 53.2% |
| 4b7yD00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.72 | 61.0 | 5.22e-01 | 95.0% | 74.2% |
| 7ymiZ01 | 1.10.287.740 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Photosystem II PsbZ, reaction centre | 0.72 | 57.0 | 5.82e-01 | 88.3% | 91.4% |
| 4e6nA02 | 6.10.140.1010 | Special › Helix non-globular › Helix Hairpins › | 0.72 | 63.0 | 6.15e-01 | 100.0% | 92.4% |
| 2nn4A00 | 1.10.287.760 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YqgQ-like | 0.72 | 47.0 | 4.73e-01 | 73.3% | 66.1% |
| 4od8D00 | 6.10.140.1880 | Special › Helix non-globular › Helix Hairpins › | 0.71 | 49.0 | 5.26e-01 | 81.7% | 86.3% |
| 2ic6A00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.71 | 60.0 | 5.73e-01 | 96.7% | 83.1% |
| 2jx4A01 | 6.10.140.460 | Special › Helix non-globular › Helix Hairpins › | 0.70 | 48.0 | 5.21e-01 | 73.3% | 97.9% |
| 2jaeA03 | 1.20.1440.240 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › | 0.70 | 53.0 | 4.44e-01 | 81.7% | 56.4% |
| 1skvA00 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.70 | 56.0 | 5.57e-01 | 95.0% | 87.5% |
| 3g67A00 | 1.10.287.950 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Methyl-accepting chemotaxis protein | 0.69 | 58.0 | 4.07e-01 | 100.0% | 29.1% |
| 4nb5B02 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.69 | 55.0 | 5.44e-01 | 95.0% | 85.9% |
| 4abnA01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.69 | 60.0 | 3.85e-01 | 96.7% | 31.5% |
| 2qywA00 | 1.20.58.400 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › t-snare proteins | 0.69 | 59.0 | 5.07e-01 | 96.7% | 62.1% |
| 2qm8A03 | 1.10.287.130 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain | 0.68 | 49.0 | 4.82e-01 | 76.7% | 96.9% |
| 4mh6A00 | 1.10.287.1700 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.67 | 57.0 | 4.31e-01 | 100.0% | 40.9% |
| 4iggA01 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.67 | 58.0 | 5.66e-01 | 100.0% | 92.5% |
| 2d9dA00 | 1.20.58.120 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain | 0.64 | 51.0 | 4.52e-01 | 90.0% | 59.6% |
| 2yf4F00 | 1.10.3420.10 | Mainly Alpha › Orthogonal Bundle › putative ntp pyrophosphohydrolase like fold › putative ntp pyrophosphohydrolase like domain | 0.64 | 56.0 | 4.24e-01 | 96.7% | 51.7% |
| 4bpxD00 | 1.20.930.80 | Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › | 0.64 | 55.0 | 3.76e-01 | 95.0% | 38.0% |
| 3favD00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.63 | 54.0 | 5.04e-01 | 100.0% | 85.9% |
| 2kw6A00 | 6.10.140.1300 | Special › Helix non-globular › Helix Hairpins › | 0.63 | 46.0 | 4.51e-01 | 80.0% | 76.9% |
| 2db7A01 | 6.10.250.980 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.63 | 51.0 | 5.37e-01 | 88.3% | 100.0% |
| 1tj7A01 | 1.10.275.10 | Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) | 0.63 | 48.0 | 4.08e-01 | 86.7% | 48.6% |
| 4nsmA00 | 6.10.250.2770 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.63 | 54.0 | 5.19e-01 | 100.0% | 88.7% |
| 6t0bc01 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.63 | 56.0 | 5.12e-01 | 100.0% | 78.2% |
| 2mpnA00 | 6.10.140.1340 | Special › Helix non-globular › Helix Hairpins › | 0.61 | 48.0 | 4.69e-01 | 90.0% | 89.7% |
| 1vi0A02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.60 | 46.0 | 3.47e-01 | 83.3% | 40.0% |
| 2pusA04 | 6.10.140.300 | Special › Helix non-globular › Helix Hairpins › | 0.60 | 44.0 | 3.79e-01 | 85.0% | 47.2% |
| 2bg1A01 | 3.90.1310.40 | Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › | 0.59 | 41.0 | 3.73e-01 | 71.7% | 79.2% |
| 1m62A00 | 1.20.58.120 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain | 0.58 | 49.0 | 4.38e-01 | 96.7% | 80.5% |
| 1vibA00 | 1.10.287.120 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Neurotoxin B-IV-like | 0.55 | 42.0 | 4.40e-01 | 88.3% | 92.7% |
ECOD (39)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3260684 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.86 | 70.0 | 7.25e-01 | 86.7% | 94.5% |
| 4384067 | 632.7.1.37 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › LETM1_RBD | 0.84 | 76.0 | 6.12e-01 | 98.3% | 53.6% |
| 3380124 | 109.4.1.1266 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Arm, ARM_PUB | 0.83 | 67.0 | 4.03e-01 | 90.0% | 14.2% |
| 3928795 | 604.6.1.0 ↗ | alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain | 0.81 | 66.0 | 5.62e-01 | 90.0% | 55.8% |
| 3471712 | 604.8.1.0 ↗ | alpha bundles › Spectrin repeat-like › Smac/diablo › Smac/diablo | 0.81 | 74.0 | 5.73e-01 | 100.0% | 59.2% |
| 4042824 | 192.8.1.0 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain | 0.81 | 74.0 | 6.67e-01 | 100.0% | 80.0% |
| 4386543 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.80 | 72.0 | 4.65e-01 | 100.0% | 24.7% |
| 3203010 | 605.1.1.139 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › LETM1_RBD | 0.79 | 70.0 | 5.90e-01 | 100.0% | 83.0% |
| 3840952 | 601.19.1.39 ↗ | alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein › LIN9_C | 0.79 | 68.0 | 6.33e-01 | 95.0% | 81.3% |
| 3708789 | 3922.1.1.0 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 | 0.79 | 72.0 | 6.08e-01 | 100.0% | 66.3% |
| 3754639 | 150.5.1.106 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › LIN9_C | 0.78 | 70.0 | 6.25e-01 | 100.0% | 77.6% |
| 4015612 | 616.1.1.0 ↗ | alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain | 0.78 | 56.0 | 4.99e-01 | 81.7% | 54.1% |
| 3720672 | 109.4.1.1591 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › U-box | 0.78 | 65.0 | 4.12e-01 | 90.0% | 19.6% |
| 3289545 | 150.8.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › PPE › PPE | 0.78 | 71.0 | 4.88e-01 | 100.0% | 34.7% |
| 3991599 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.77 | 70.0 | 5.87e-01 | 100.0% | 63.0% |
| 3477418 | 4992.1.1.12 ↗ | extended segments › RelB-like › RelB-like › RelB-like › LIN9_C | 0.77 | 69.0 | 5.87e-01 | 100.0% | 70.5% |
| 3988454 | 605.1.1.1 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA | 0.77 | 60.0 | 5.77e-01 | 86.7% | 77.1% |
| 3188597 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.77 | 63.0 | 5.50e-01 | 90.0% | 66.7% |
| 2663455 | 192.7.1.0 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm | 0.76 | 66.0 | 6.34e-01 | 95.0% | 83.8% |
| 3287947 | 605.1.1.1 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA | 0.76 | 67.0 | 5.86e-01 | 100.0% | 73.3% |
| 3691750 | 376.1.1.8 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › U-box | 0.75 | 59.0 | 4.33e-01 | 83.3% | 34.2% |
| 3583169 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.75 | 65.0 | 5.98e-01 | 100.0% | 75.0% |
| 1164229 | 605.1.1.4 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA_3 | 0.75 | 63.0 | 6.14e-01 | 91.7% | 92.4% |
| 3355246 | 192.1.1.0 ↗ | alpha bundles › Long alpha-hairpin › GreA transcript cleavage protein, N-terminal domain › GreA transcript cleavage protein, N-terminal domain | 0.74 | 66.0 | 5.99e-01 | 100.0% | 73.8% |
| 3600071 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.72 | 52.0 | 5.10e-01 | 78.3% | 70.8% |
| 4936129 | 5067.1.1.2 ↗ | alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › SecD_SecF | 0.72 | 62.0 | 4.19e-01 | 100.0% | 25.7% |
| 3489764 | 604.1.1.1 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin | 0.71 | 61.0 | 5.19e-01 | 100.0% | 58.1% |
| 3988447 | 5043.1.1.0 ↗ | extended segments › Sensor proteins transmembrane domains › Htr2 transmembrane domain-like › Htr2 transmembrane domain-like | 0.70 | 54.0 | 5.61e-01 | 100.0% | 87.3% |
| 4946898 | 375.1.9.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Zinc-nucleated domain of serine integrase | 0.70 | 63.0 | 5.81e-01 | 100.0% | 78.7% |
| 3611632 | 192.7.1.0 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm | 0.69 | 60.0 | 5.14e-01 | 100.0% | 63.0% |
| 2485668 | 7025.1.1.2 ↗ | alpha bundles › LIN9-LIN52 heterodimer › LIN9-LIN52 heterodimer › LIN9-LIN52 heterodimer › LIN9_C | 0.69 | 59.0 | 5.36e-01 | 100.0% | 88.1% |
| 3506760 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.69 | 59.0 | 4.67e-01 | 100.0% | 47.7% |
| 4961961 | 605.1.1.1 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA | 0.68 | 58.0 | 5.42e-01 | 98.3% | 76.0% |
| 5083776 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.68 | 58.0 | 4.98e-01 | 95.0% | 89.5% |
| 4801882 | 192.1.1.1 ↗ | alpha bundles › Long alpha-hairpin › GreA transcript cleavage protein, N-terminal domain › GreA transcript cleavage protein, N-terminal domain › MCPsignal | 0.68 | 53.0 | 5.29e-01 | 90.0% | 87.5% |
| 3269863 | 246.2.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos | 0.67 | 61.0 | 3.66e-01 | 100.0% | 15.2% |
| 3516130 | 604.1.1.1 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin | 0.66 | 56.0 | 4.38e-01 | 100.0% | 43.0% |
| 4020464 | 1203.1.2.4 ↗ | alpha bundles › Shroom domain 2 › Shroom domain 2 › Human SD2 › Vps55 | 0.65 | 58.0 | 4.49e-01 | 100.0% | 90.7% |
| 4214655 | 605.1.1.1 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA | 0.65 | 54.0 | 5.06e-01 | 100.0% | 78.8% |