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NC_073468.1__YP_010755074.1__QEH42_gp043__00043

Bact-Vir

NC_073468.1__YP_010755074.1__QEH42_gp043__00043

Identity

Accession:
NC_073468 ↗
Kingdom:
phage

Quality

83.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-53
PDB
Domain cluster: representative
CATH (41)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2cduA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.77 43.0 2.96e-01 75.5% 17.9%
2z4hA01 2.40.128.300 Mainly Beta › Beta Barrel › Lipocalin › NlpE, N-terminal domain 0.76 46.0 3.87e-01 83.7% 38.0%
1wgrA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.70 47.0 3.99e-01 73.5% 41.5%
1ml8A01 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.68 42.0 4.85e-01 83.7% 91.2%
3pvlA02 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.68 47.0 3.83e-01 79.6% 37.5%
3vz9B00 3.30.457.50 Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › Chromosome segregation protein Spc25 0.67 56.0 4.55e-01 100.0% 81.6%
4c5wA01 3.30.2020.30 Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › 0.66 55.0 4.37e-01 91.8% 93.8%
4pofA03 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.65 44.0 4.42e-01 85.7% 70.0%
5dmxB02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.63 49.0 3.42e-01 83.7% 26.9%
4uskA01 3.30.230.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.63 51.0 3.48e-01 91.8% 40.8%
1iowA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.63 50.0 3.61e-01 89.8% 90.6%
5ajiB02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.63 42.0 4.24e-01 73.5% 68.0%
1y13A00 3.30.479.10 Alpha Beta › 2-Layer Sandwich › Tetrahydropterin Synthase; Chain A › 6-pyruvoyl tetrahydropterin synthase/QueD 0.62 48.0 3.43e-01 89.8% 41.7%
1lu4A00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.62 48.0 3.55e-01 85.7% 80.6%
1wx9A00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.62 43.0 3.70e-01 77.6% 41.9%
4u7cB04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.62 49.0 3.98e-01 95.9% 75.2%
1vw4F02 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.62 47.0 3.97e-01 87.8% 63.0%
6g6qA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.61 42.0 3.06e-01 73.5% 37.5%
1ltlA03 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.61 41.0 4.18e-01 87.8% 71.4%
3rhaA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.61 51.0 2.98e-01 95.9% 70.2%
3hr8A02 3.30.250.10 Alpha Beta › 2-Layer Sandwich › Rec A Protein; domain 2 › RecA protein, C-terminal domain 0.61 43.0 3.83e-01 87.8% 50.7%
7o06C01 3.30.1470.10 Alpha Beta › 2-Layer Sandwich › Photosystem 1 Reaction Centre Subunit Ii; Chain: D; › Photosystem I PsaD, reaction center subunit II 0.59 46.0 3.88e-01 89.8% 90.1%
3uuwB02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.59 38.0 2.65e-01 100.0% 17.9%
2i87B02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.58 48.0 3.31e-01 89.8% 73.0%
3rp7A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.58 46.0 3.31e-01 95.9% 91.1%
2mlbA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.58 39.0 3.52e-01 79.6% 45.6%
1jx4A04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.57 47.0 3.92e-01 100.0% 60.2%
4p79A00 1.20.140.150 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › 0.57 50.0 3.41e-01 100.0% 65.7%
2mysA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.56 34.0 3.49e-01 73.5% 60.4%
3iteB01 3.40.50.12780 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain 0.56 49.0 2.88e-01 100.0% 46.2%
6ofsA03 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.56 46.0 3.04e-01 93.9% 99.1%
2vouB01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 45.0 2.88e-01 89.8% 60.8%
1x31B02 3.30.9.10 Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › D-Amino Acid Oxidase, subunit A, domain 2 0.55 40.0 3.05e-01 89.8% 44.8%
4bjzA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 42.0 3.09e-01 95.9% 92.9%
4q66D01 6.20.120.50 Special › Other non-globular › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.54 40.0 3.62e-01 83.7% 56.2%
4jxuA02 3.20.10.10 Alpha Beta › Alpha-Beta Barrel › D-amino Acid Aminotransferase; Chain A, domain 2 › D-amino Acid Aminotransferase, subunit A, domain 2 0.54 46.0 3.29e-01 98.0% 61.0%
5xbfA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 43.0 3.49e-01 87.8% 89.8%
5hdiA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.53 43.0 2.59e-01 100.0% 11.8%
2pw4A00 1.10.3300.10 Mainly Alpha › Orthogonal Bundle › Jann2411-like fold › Jann2411-like domain 0.52 46.0 3.11e-01 100.0% 51.9%
2k2dA00 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.52 32.0 3.32e-01 79.6% 61.7%
1yuzA02 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.50 31.0 3.42e-01 85.7% 73.7%
ECOD (54)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4862553 2003.1.2.24 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.76 43.0 3.31e-01 75.5% 27.0%
4011910 633.23.1.9 alpha bundles › Bromodomain-like › Claudin › Claudin › SUR7 0.73 50.0 3.30e-01 73.5% 17.1%
5009324 218.4.1.1 a+b two layers › Enolase-N/ribosomal protein › Dhaf4260 N-terminal domain › Dhaf4260 N-terminal domain › DUF4213 0.72 57.0 4.93e-01 89.8% 81.2%
4208229 4.8.1.5 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.72 46.0 4.58e-01 73.5% 64.0%
5006876 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.72 63.0 4.83e-01 100.0% 46.0%
3924808 719.2.1.0 beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like 0.71 58.0 4.98e-01 91.8% 92.5%
4996855 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.71 61.0 4.59e-01 100.0% 40.0%
3307236 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.69 60.0 4.56e-01 100.0% 44.2%
4026981 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.67 41.0 3.60e-01 79.6% 40.0%
3621362 883.1.1.15 a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP+LBP_BPI_CETP_C 0.67 54.0 3.11e-01 87.8% 13.3%
4297175 218.1.1.8 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA 0.66 55.0 4.66e-01 100.0% 93.3%
3967396 4263.2.1.1 a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain › FtsH_ext 0.65 45.0 4.11e-01 73.5% 58.5%
4986651 319.1.1.0 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.65 46.0 3.98e-01 75.5% 57.3%
4494033 4263.2.1.0 a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain 0.65 45.0 4.02e-01 73.5% 57.1%
3736685 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.63 56.0 3.85e-01 100.0% 34.1%
4971396 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.63 43.0 4.21e-01 87.8% 63.6%
4124640 874.1.1.2 a+b duplicates or obligate multimers › Smc hinge domain › Smc hinge domain › Smc hinge domain › MukB_hinge 0.63 46.0 2.80e-01 91.8% 13.3%
4477006 874.1.1.2 a+b duplicates or obligate multimers › Smc hinge domain › Smc hinge domain › Smc hinge domain › MukB_hinge 0.63 46.0 2.66e-01 91.8% 9.0%
4956223 2484.1.1.34 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 0.62 49.0 2.99e-01 87.8% 14.2%
3990241 391.1.2.0 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related 0.61 39.0 4.06e-01 75.5% 72.1%
4945660 230.1.1.3 a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › PTPS 0.61 51.0 3.71e-01 95.9% 83.3%
3675176 223.1.1.28 a+b three layers › Profilin-like › sensor domains › sensor domains › bHLH-MYC_N 0.60 48.0 3.63e-01 100.0% 46.0%
3524259 633.23.1.1 alpha bundles › Bromodomain-like › Claudin › Claudin › PMP22_Claudin 0.60 54.0 3.58e-01 100.0% 69.2%
3912697 292.2.1.3 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › Plk4_PB2 0.59 49.0 3.73e-01 89.8% 50.0%
4384294 2.1.1.60 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RsgI_N 0.59 42.0 4.43e-01 81.6% 92.5%
4269264 2.1.1.60 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RsgI_N 0.59 42.0 4.30e-01 83.7% 84.4%
3425564 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.59 46.0 2.72e-01 91.8% 13.1%
3192826 5050.1.1.9 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.59 51.0 3.26e-01 100.0% 61.5%
3513469 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.58 48.0 3.48e-01 93.9% 100.0%
4683204 101.35.1.5 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH1 0.58 48.0 3.72e-01 91.8% 41.9%
3257938 330.7.1.2 a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain › HicA_toxin 0.58 47.0 4.43e-01 89.8% 73.3%
1405151 221.1.1.2 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ubiquitin 0.58 39.0 3.52e-01 79.6% 45.6%
4018320 5.1.8.3 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › putative conserved lipoprotein NT01CX_1156 › WD40 0.57 43.0 2.98e-01 85.7% 31.6%
4276290 206.1.3.19 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › Dala_Dala_lig_C 0.57 42.0 2.82e-01 89.8% 44.4%
3716765 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.57 46.0 2.67e-01 95.9% 10.7%
5002984 330.7.1.2 a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain › HicA_toxin 0.57 47.0 4.15e-01 98.0% 64.3%
4795169 5.1.4.404 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_IP5PC_F 0.57 42.0 3.10e-01 85.7% 36.7%
5014724 295.1.1.51 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › FtsQ_DivIB_C 0.56 50.0 3.96e-01 100.0% 53.0%
4014861 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 45.0 2.91e-01 91.8% 23.3%
3705380 857.1.1.19 a+b duplicates or obligate multimers › Cell division protein ZapA-like › Cell division protein ZapA-like › Cell division protein ZapA-like › Ax_dynein_light 0.56 50.0 3.79e-01 100.0% 84.3%
3507975 145.1.1.0 alpha arrays › F-box domain › F-box domain › F-box domain 0.56 41.0 2.62e-01 85.7% 18.7%
3464286 5.1.5.37 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › DUF295 0.56 43.0 2.75e-01 91.8% 15.2%
5002760 330.7.1.2 a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain › HicA_toxin 0.55 45.0 4.05e-01 98.0% 64.3%
4947543 330.7.1.2 a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain › HicA_toxin 0.55 46.0 4.04e-01 98.0% 62.2%
3886244 633.23.1.1 alpha bundles › Bromodomain-like › Claudin › Claudin › PMP22_Claudin 0.55 49.0 3.26e-01 100.0% 64.5%
4968280 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.55 44.0 3.81e-01 100.0% 100.0%
3262260 2003.2.1.1 a/b three-layered sandwiches › Rossmann-like › Formate dehydrogenase/DMSO reductase, domains 2 and 3 › Formate dehydrogenase/DMSO reductase, domains 2 and 3 › Molybdopterin 0.54 45.0 2.80e-01 89.8% 52.3%
5075316 330.7.1.0 a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain 0.54 45.0 4.04e-01 98.0% 65.7%
3964178 324.1.1.1 a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC 0.54 47.0 3.40e-01 95.9% 37.8%
4537639 874.1.1.0 a+b duplicates or obligate multimers › Smc hinge domain › Smc hinge domain › Smc hinge domain 0.54 48.0 2.74e-01 98.0% 79.2%
3392529 719.2.1.1 beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like › GBBH-like_N 0.53 40.0 3.40e-01 85.7% 97.8%
3627455 3906.1.1.1 extended segments › Mitoribosomal protein mL52 › Mitoribosomal protein mL52 › Mitoribosomal protein mL52 › MRPL52 0.53 38.0 3.43e-01 95.9% 52.9%
4019781 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.52 42.0 2.71e-01 98.0% 41.9%
4313114 378.1.1.30 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › PF30178 0.51 43.0 3.31e-01 98.0% 40.0%