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NC_073468.1__YP_010755082.1__QEH42_gp051__00051

Bact-Vir

NC_073468.1__YP_010755082.1__QEH42_gp051__00051

Identity

Accession:
NC_073468 ↗
Kingdom:
phage

Quality

96.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pumpernickelvirus› Microbacterium_phage_Pumpernickel

TaxID: 2885983

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 52-123
PDB
Domain cluster: representative
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ymsC00 2.40.10.480 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.71 37.0 3.73e-01 79.2% 49.3%
1nbwB00 3.40.50.10150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › B12-dependent dehydatase associated subunit 0.64 47.0 4.06e-01 77.8% 69.9%
1gxrA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.63 38.0 2.42e-01 79.2% 12.8%
1x4rA01 3.30.720.50 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.62 40.0 3.88e-01 75.0% 59.5%
2dvkA00 3.30.1960.10 Alpha Beta › 2-Layer Sandwich › SSo0622-like fold › tRNA wybutosine-synthesizing-like 0.60 47.0 3.60e-01 84.7% 68.1%
2pt7C01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.59 38.0 3.38e-01 77.8% 45.3%
1x99A00 2.60.270.20 Mainly Beta › Sandwich › Mutm (Fpg) Protein; Chain: A, domain 2 › Cytolysin/lectin 0.56 47.0 3.79e-01 94.4% 77.2%
3fm8A00 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.56 41.0 3.78e-01 80.6% 68.4%
6u5uG07 3.30.1120.100 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.55 43.0 3.58e-01 86.1% 100.0%
2cswA01 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.55 41.0 3.44e-01 80.6% 59.5%
2xbkA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.55 42.0 2.74e-01 87.5% 87.0%
4ihqA01 3.30.450.370 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.54 44.0 3.52e-01 94.4% 52.2%
1vyhC01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 38.0 2.55e-01 76.4% 30.6%
6k5gA01 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.53 43.0 3.00e-01 93.1% 81.4%
8adbA01 3.90.70.120 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.52 41.0 3.07e-01 88.9% 44.9%
7o06C01 3.30.1470.10 Alpha Beta › 2-Layer Sandwich › Photosystem 1 Reaction Centre Subunit Ii; Chain: D; › Photosystem I PsaD, reaction center subunit II 0.52 29.0 2.76e-01 100.0% 40.7%
4xmqA01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.52 36.0 3.03e-01 72.2% 55.6%
4innA00 2.40.128.520 Mainly Beta › Beta Barrel › Lipocalin › 0.52 36.0 3.02e-01 75.0% 79.5%
5wbyC01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 37.0 2.52e-01 77.8% 26.5%
3nqkA02 2.40.128.440 Mainly Beta › Beta Barrel › Lipocalin › Uncharacterised protein PF14274, DUF4361 0.51 40.0 3.16e-01 87.5% 55.0%
4immA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 37.0 2.41e-01 76.4% 26.6%
2gzaA01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.51 37.0 3.26e-01 77.8% 93.5%
3jbtA05 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.50 36.0 2.43e-01 77.8% 23.8%
5m1pB00 3.30.420.240 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.50 36.0 2.73e-01 77.8% 41.3%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4773067 5.1.4.40 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PQQ_2 0.71 37.0 3.73e-01 79.2% 49.3%
3482075 73.1.1.1 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › FHA 0.57 43.0 3.69e-01 81.9% 63.5%
4195918 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.56 41.0 2.88e-01 77.8% 35.9%
3305609 330.7.1.0 ↗ a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain 0.56 39.0 3.79e-01 98.6% 65.0%
4665726 220.1.1.256 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Red1 0.56 45.0 3.85e-01 87.5% 82.6%
3198770 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.54 39.0 2.61e-01 76.4% 30.3%
3026414 4056.1.1.4 ↗ beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Head-tail_con 0.54 37.0 3.09e-01 72.2% 79.5%
3939041 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.53 38.0 2.53e-01 77.8% 28.2%
3335997 5.3.1.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II › S_locus_glycop 0.53 39.0 3.25e-01 79.2% 97.7%
3359034 5.1.5.75 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40, ANAPC4_WD40 0.53 39.0 2.75e-01 77.8% 34.5%
3221415 5.1.4.275 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, ANAPC4_WD40, Beta-prop_NOL10_N 0.52 38.0 2.55e-01 76.4% 25.8%
3612513 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.52 38.0 2.46e-01 77.8% 29.1%
4030722 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.52 38.0 2.40e-01 79.2% 20.7%
4012216 7528.1.1.0 ↗ a/b three-layered sandwiches › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains 0.52 41.0 3.33e-01 90.3% 84.7%
3953675 330.7.1.0 ↗ a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain 0.51 34.0 3.59e-01 84.7% 76.9%
3701994 73.1.1.1 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › FHA 0.50 40.0 3.44e-01 88.9% 73.3%
3335113 5.3.1.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II 0.50 35.0 3.30e-01 73.6% 64.4%