←Back to structures
NC_073476.1__YP_010755982.1__QEJ61_gp11__00011
Bact-VirNC_073476.1__YP_010755982.1__QEJ61_gp11__00011
Identity
- Accession:
- NC_073476 ↗
- Kingdom:
- phage
Quality
79.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 9-133
Domain cluster:
rep: NC_023549.1__YP_009004248.1__CN1A_36__00036__D3-130
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02557.23 best | VanY | 34.9 | 1.70e-08 | 86.4% | 81.1% |
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4d0yA00 | 3.30.1380.10 | Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › | 0.86 | 70.0 | 6.07e-01 | 84.8% | 66.3% |
| 4mphA00 | 3.30.1380.10 | Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › | 0.86 | 82.0 | 7.08e-01 | 100.0% | 76.2% |
| 1r44A00 | 3.30.1380.10 | Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › | 0.84 | 79.0 | 6.60e-01 | 100.0% | 92.6% |
| 4muqA02 | 3.30.1380.10 | Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › | 0.84 | 80.0 | 7.52e-01 | 100.0% | 95.9% |
| 5hnmC00 | 3.30.1380.10 | Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › | 0.82 | 79.0 | 6.84e-01 | 100.0% | 78.7% |
| 2vo9A01 | 3.30.1380.10 | Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › | 0.81 | 73.0 | 7.17e-01 | 94.4% | 96.2% |
| 1vhhA00 | 3.30.1380.10 | Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › | 0.77 | 66.0 | 6.06e-01 | 100.0% | 72.0% |
| 1tzpB00 | 3.30.1380.10 | Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › | 0.71 | 67.0 | 5.29e-01 | 100.0% | 78.8% |
| 3i3vB01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.55 | 44.0 | 4.02e-01 | 86.4% | 96.4% |
| 4aq4A01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.51 | 42.0 | 3.60e-01 | 88.0% | 81.2% |
| 4on1A01 | 2.40.128.470 | Mainly Beta › Beta Barrel › Lipocalin › | 0.51 | 32.0 | 3.08e-01 | 93.6% | 55.4% |
| 2ox6D00 | 1.10.3100.10 | Mainly Alpha › Orthogonal Bundle › Putative cytoplasmic protein › Putative cytoplasmic protein | 0.50 | 32.0 | 2.98e-01 | 89.6% | 49.7% |
| 1ynfA00 | 3.75.10.20 | Alpha Beta › 5-stranded Propeller › L-arginine/glycine Amidinotransferase; Chain A › Succinylarginine dihydrolase | 0.50 | 39.0 | 2.82e-01 | 86.4% | 77.9% |
ECOD (25)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1297179 | 307.1.1.3 ↗ | a+b two layers › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › VanY | 0.87 | 83.0 | 6.75e-01 | 100.0% | 68.5% |
| 4127795 | 307.1.1.2 ↗ | a+b two layers › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Peptidase_M15 | 0.87 | 82.0 | 6.51e-01 | 99.2% | 88.6% |
| 3282282 | 307.1.1.3 ↗ | a+b two layers › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › VanY | 0.85 | 76.0 | 7.48e-01 | 96.0% | 88.5% |
| 3256406 | 307.1.1.2 ↗ | a+b two layers › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Peptidase_M15 | 0.85 | 80.0 | 6.60e-01 | 100.0% | 81.9% |
| 1103093 | 307.1.1.3 ↗ | a+b two layers › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › VanY | 0.85 | 81.0 | 6.96e-01 | 100.0% | 75.0% |
| 3978719 | 307.1.1.2 ↗ | a+b two layers › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Peptidase_M15 | 0.84 | 79.0 | 6.63e-01 | 100.0% | 90.0% |
| 5590 | 307.1.1.2 ↗ | a+b two layers › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Peptidase_M15 | 0.84 | 79.0 | 6.60e-01 | 100.0% | 92.6% |
| 3589476 | 307.1.1.3 ↗ | a+b two layers › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › VanY | 0.84 | 80.0 | 6.23e-01 | 100.0% | 57.1% |
| 4010530 | 307.1.1.2 ↗ | a+b two layers › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Peptidase_M15 | 0.83 | 78.0 | 6.88e-01 | 98.4% | 95.9% |
| 3961855 | 307.1.1.2 ↗ | a+b two layers › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Peptidase_M15 | 0.83 | 78.0 | 6.54e-01 | 100.0% | 90.5% |
| 2448156 | 307.1.1.6 ↗ | a+b two layers › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Peptidase_M15_4 | 0.81 | 73.0 | 6.81e-01 | 94.4% | 84.1% |
| None | — | 0.80 | 73.0 | 6.85e-01 | 95.2% | 87.2% | |
| 3589629 | 307.1.1.3 ↗ | a+b two layers › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › VanY | 0.80 | 76.0 | 6.33e-01 | 100.0% | 76.9% |
| 3914730 | 307.1.1.1 ↗ | a+b two layers › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › HH_signal | 0.80 | 54.0 | 6.36e-01 | 82.4% | 97.7% |
| 4861717 | 307.1.1.11 ↗ | a+b two layers › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › PF31190 | 0.73 | 62.0 | 6.30e-01 | 94.4% | 90.4% |
| 3163850 | 307.1.1.4 ↗ | a+b two layers › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Peptidase_M74 | 0.72 | 67.0 | 5.19e-01 | 100.0% | 74.1% |
| 5589 | 307.1.1.4 ↗ | a+b two layers › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Peptidase_M74 | 0.71 | 67.0 | 5.29e-01 | 100.0% | 77.5% |
| 4600927 | 307.1.1.0 ↗ | a+b two layers › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase | 0.71 | 67.0 | 5.19e-01 | 100.0% | 73.2% |
| 3285027 | 307.1.1.5 ↗ | a+b two layers › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Peptidase_M15_3 | 0.67 | 62.0 | 5.59e-01 | 100.0% | 73.5% |
| 3942276 | 307.1.1.8 ↗ | a+b two layers › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Peptidase_M15_2 | 0.65 | 57.0 | 5.47e-01 | 95.2% | 94.5% |
| 1497958 | 307.1.1.11 ↗ | a+b two layers › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › PF31190 | 0.64 | 56.0 | 5.42e-01 | 94.4% | 97.8% |
| 3484161 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.56 | 35.0 | 3.64e-01 | 92.0% | 65.0% |
| 5011011 | 3012.1.1.0 ↗ | a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain | 0.56 | 29.0 | 3.83e-01 | 74.4% | 96.9% |
| 3404231 | 2011.1.1.1 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M14 | 0.53 | 41.0 | 3.08e-01 | 83.2% | 34.6% |
| 4948443 | 304.8.1.10 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_7 | 0.51 | 36.0 | 3.41e-01 | 72.0% | 86.7% |
D2
high
residues 157-217