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NC_073485.1__YP_010756275.1__QEN62_gp39__00039

Bact-Vir

NC_073485.1__YP_010756275.1__QEN62_gp39__00039

Identity

Accession:
NC_073485 ↗
Kingdom:
phage

Quality

87.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 3-105
PDB
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4b9wA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.63 35.0 4.48e-01 74.8% 100.0%
3j7aF03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.60 41.0 4.73e-01 100.0% 100.0%
4xtvB02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.58 30.0 3.80e-01 72.8% 100.0%
5ycqA00 2.30.30.390 Mainly Beta › Roll › SH3 type barrels. › Hemimethylated DNA-binding domain 0.58 40.0 4.52e-01 72.8% 97.4%
6vilA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.53 46.0 4.12e-01 96.1% 88.3%
4ft4B01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.52 46.0 4.09e-01 99.0% 96.0%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4931822 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 35.0 4.25e-01 92.2% 83.1%
4953223 4.1.1.28 beta barrels › SH3 › SH3 › SH3 › BPL_C 0.64 33.0 4.34e-01 90.3% 100.0%
3518475 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 40.0 4.67e-01 83.5% 92.9%
4985100 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 32.0 4.15e-01 89.3% 98.0%
4957377 4.1.1.28 beta barrels › SH3 › SH3 › SH3 › BPL_C 0.60 33.0 3.95e-01 92.2% 85.7%
3638086 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.59 44.0 3.73e-01 79.6% 95.0%
4139090 4.1.1.364 beta barrels › SH3 › SH3 › SH3 › GatD_N 0.59 33.0 4.05e-01 91.3% 100.0%
4024913 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.57 34.0 4.11e-01 80.6% 93.8%
5029405 4.17.1.1 beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.56 32.0 3.87e-01 90.3% 98.2%
4044269 4.17.1.1 beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.55 32.0 3.67e-01 72.8% 81.4%
3855972 4.1.1.253 beta barrels › SH3 › SH3 › SH3 › DUF4537 0.54 33.0 3.99e-01 85.4% 96.9%
3579728 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.51 33.0 3.79e-01 87.4% 97.1%
3793656 4.1.1.169 beta barrels › SH3 › SH3 › SH3 › DUF4819 0.51 39.0 3.50e-01 82.5% 82.1%
3214694 4.1.1.331 beta barrels › SH3 › SH3 › SH3 › DUF4708 0.50 36.0 3.58e-01 73.8% 94.3%
D2 medium residues 125-188
PDB
Domain cluster: representative
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3n7lA02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.53 40.0 2.98e-01 85.9% 62.2%
4b0eD00 3.10.20.410 Alpha Beta › Roll › Ubiquitin-like (UB roll) › PapC, N-terminal domain 0.52 40.0 3.63e-01 90.6% 82.0%
1wc1C00 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.51 35.0 2.59e-01 75.0% 45.8%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3596422 2004.1.1.250 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd 0.51 41.0 2.52e-01 95.3% 21.6%