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NC_073486.1__YP_010756321.1__QEN63_gp27__00027
Bact-VirNC_073486.1__YP_010756321.1__QEN63_gp27__00027
Identity
- Accession:
- NC_073486 ↗
- Kingdom:
- phage
Quality
87.0
mean pLDDT
Taxonomy
TaxID: 2736273
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 10-59
Domain cluster:
representative
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1w36B03 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.84 | 56.0 | 3.40e-01 | 70.0% | 16.1% |
| 3zs7A00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.66 | 54.0 | 3.35e-01 | 90.0% | 90.3% |
| 2fqmA01 | 6.10.140.830 | Special › Helix non-globular › Helix Hairpins › | 0.64 | 50.0 | 5.24e-01 | 84.0% | 100.0% |
| 1tvzA02 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.63 | 43.0 | 3.09e-01 | 98.0% | 24.5% |
| 7oode01 | 3.90.930.12 | Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 | 0.62 | 45.0 | 4.06e-01 | 78.0% | 94.1% |
| 1k8iA01 | 3.10.320.10 | Alpha Beta › Roll › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 | 0.60 | 46.0 | 4.13e-01 | 88.0% | 66.2% |
| 6v04A01 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.59 | 52.0 | 3.81e-01 | 98.0% | 100.0% |
| 2xzm901 | 6.20.50.180 | Special › Other non-globular › N-terminal domain of TfIIb › | 0.58 | 46.0 | 4.15e-01 | 90.0% | 97.2% |
| 5ucoA02 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.56 | 43.0 | 3.07e-01 | 86.0% | 54.9% |
| 7febA03 | 3.40.50.12790 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › FHIPEP family, domain 4 | 0.55 | 40.0 | 3.30e-01 | 84.0% | 41.3% |
| 4bmjA00 | 6.20.250.40 | Special › Other non-globular › Double Stranded RNA Binding Domain › | 0.54 | 36.0 | 3.45e-01 | 84.0% | 58.1% |
| 2lxwA00 | 6.10.250.1730 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.50 | 39.0 | 3.86e-01 | 90.0% | 78.2% |
ECOD (25)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4303957 | 2006.1.6.15 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › DUF58 | 0.78 | 58.0 | 3.95e-01 | 78.0% | 34.2% |
| 5060491 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.75 | 54.0 | 3.98e-01 | 88.0% | 31.7% |
| 3463832 | 386.1.1.334 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › Utp11 | 0.70 | 54.0 | 3.88e-01 | 82.0% | 35.4% |
| 3777260 | 109.4.1.148 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › EST1_DNA_bind,EST1 | 0.69 | 60.0 | 3.32e-01 | 94.0% | 24.9% |
| 2755589 | 375.1.1.14 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Ribosomal_L32p | 0.66 | 43.0 | 3.29e-01 | 76.0% | 30.0% |
| 4970593 | 304.48.1.0 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like | 0.66 | 59.0 | 3.73e-01 | 100.0% | 73.2% |
| 3534814 | 386.1.1.4 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED | 0.66 | 45.0 | 4.00e-01 | 84.0% | 51.4% |
| 3958774 | 2006.1.6.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like | 0.65 | 57.0 | 3.46e-01 | 94.0% | 62.2% |
| 5018431 | 109.4.1.210 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_19 | 0.65 | 53.0 | 3.14e-01 | 88.0% | 20.3% |
| 3723305 | 3755.3.1.322 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › LUC7 | 0.64 | 52.0 | 3.67e-01 | 90.0% | 52.3% |
| 3613028 | 320.4.1.3 ↗ | a+b two layers › R3H domain-like › PUB domain › PUB domain › PUB | 0.64 | 56.0 | 4.30e-01 | 100.0% | 72.2% |
| 4944945 | 7523.1.1.0 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II | 0.63 | 51.0 | 3.98e-01 | 88.0% | 59.0% |
| 4088600 | 318.1.1.1 ↗ | a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 | 0.60 | 49.0 | 4.05e-01 | 88.0% | 55.3% |
| 3903614 | 375.1.3.2 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Hypothetical protein MTH1184 › MRNIP | 0.60 | 53.0 | 4.85e-01 | 98.0% | 76.9% |
| 3905886 | 376.1.1.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 | 0.60 | 40.0 | 3.29e-01 | 70.0% | 73.3% |
| 5000660 | 2492.1.1.0 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like | 0.60 | 41.0 | 2.87e-01 | 76.0% | 87.9% |
| 1420609 | 375.1.1.14 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Ribosomal_L32p | 0.56 | 36.0 | 2.88e-01 | 78.0% | 29.5% |
| 3570006 | 386.1.1.37 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › Zn-C2H2_12 | 0.55 | 33.0 | 4.00e-01 | 74.0% | 100.0% |
| 3925231 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.55 | 36.0 | 3.47e-01 | 76.0% | 58.3% |
| 3658440 | 386.1.1.26 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2_6 | 0.54 | 41.0 | 4.01e-01 | 98.0% | 74.5% |
| 3931217 | 502.1.1.0 ↗ | a+b two layers › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain | 0.53 | 36.0 | 3.31e-01 | 76.0% | 53.8% |
| 4952442 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.53 | 37.0 | 3.78e-01 | 76.0% | 82.0% |
| 3935829 | 386.1.1.4 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED | 0.53 | 41.0 | 3.93e-01 | 86.0% | 84.7% |
| 3615679 | 101.1.10.1 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N | 0.51 | 39.0 | 2.76e-01 | 90.0% | 67.7% |
| 4947413 | 304.163.1.0 ↗ | a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain | 0.51 | 39.0 | 3.59e-01 | 82.0% | 81.5% |
D2
medium
residues 65-113
Domain cluster:
representative
CATH (21)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2qw7C00 | 2.40.50.220 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › EutN/Ccml | 0.68 | 48.0 | 3.88e-01 | 75.5% | 42.1% |
| 2hd3K00 | 2.40.50.220 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › EutN/Ccml | 0.67 | 47.0 | 3.83e-01 | 75.5% | 42.6% |
| 4ubtD00 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.62 | 45.0 | 2.65e-01 | 77.6% | 47.3% |
| 2ei0A02 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.57 | 37.0 | 2.75e-01 | 83.7% | 21.7% |
| 3lm4A01 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.57 | 36.0 | 2.74e-01 | 83.7% | 22.8% |
| 6ixyA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 40.0 | 2.91e-01 | 73.5% | 33.8% |
| 8fkmA01 | 3.30.1460.50 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.55 | 42.0 | 3.03e-01 | 87.8% | 50.6% |
| 1m4zA01 | 2.30.30.490 | Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain | 0.55 | 40.0 | 2.75e-01 | 81.6% | 45.9% |
| 3vb0A02 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.55 | 36.0 | 2.60e-01 | 83.7% | 20.6% |
| 4oelB00 | 2.40.50.170 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Cysteine proteinases. Chain C | 0.54 | 38.0 | 3.45e-01 | 77.6% | 53.6% |
| 3caxA02 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.54 | 39.0 | 2.97e-01 | 81.6% | 30.4% |
| 3q5zA02 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.54 | 40.0 | 3.11e-01 | 83.7% | 60.3% |
| 2crfA01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.53 | 40.0 | 3.03e-01 | 83.7% | 46.4% |
| 4gc1A02 | 2.90.10.10 | Mainly Beta › Orthogonal Prism › Agglutinin, subunit A › Bulb-type lectin domain | 0.53 | 45.0 | 3.63e-01 | 100.0% | 55.4% |
| 1kw3B02 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.52 | 35.0 | 2.62e-01 | 83.7% | 22.7% |
| 3ibvB00 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.52 | 35.0 | 1.89e-01 | 83.7% | 3.8% |
| 4dm5A00 | 3.30.1450.10 | Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › | 0.52 | 34.0 | 2.95e-01 | 75.5% | 37.9% |
| 2x5cA01 | 3.30.70.3590 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 37.0 | 3.10e-01 | 79.6% | 46.2% |
| 2gu3A02 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 35.0 | 3.30e-01 | 83.7% | 57.1% |
| 2y1sA00 | 2.30.60.10 | Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N | 0.51 | 34.0 | 2.83e-01 | 83.7% | 33.3% |
| 3cz8A02 | 3.10.50.10 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.50 | 32.0 | 3.16e-01 | 75.5% | 52.6% |
ECOD (24)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4008273 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.68 | 46.0 | 4.07e-01 | 71.4% | 57.1% |
| 3785706 | 2485.1.1.1 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin | 0.64 | 45.0 | 3.36e-01 | 75.5% | 64.4% |
| 3612106 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.63 | 42.0 | 3.77e-01 | 77.6% | 46.7% |
| 3629138 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.62 | 43.0 | 4.11e-01 | 75.5% | 63.3% |
| 3240000 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.61 | 43.0 | 4.10e-01 | 77.6% | 65.0% |
| 3790199 | 64.5.1.0 ↗ | beta meanders › WW domain-like › Connector region of RNA helicase HrpB › Connector region of RNA helicase HrpB | 0.60 | 41.0 | 3.98e-01 | 75.5% | 63.3% |
| 4028630 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.60 | 43.0 | 4.00e-01 | 77.6% | 60.0% |
| 3512923 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.59 | 39.0 | 2.90e-01 | 71.4% | 23.6% |
| 3401476 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.57 | 40.0 | 3.90e-01 | 75.5% | 69.1% |
| 358135 | 211.1.1.1 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase | 0.57 | 37.0 | 3.20e-01 | 83.7% | 36.7% |
| 4939371 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.57 | 36.0 | 2.87e-01 | 81.6% | 27.8% |
| 3419351 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.55 | 37.0 | 3.50e-01 | 77.6% | 55.4% |
| 4779630 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.54 | 38.0 | 3.45e-01 | 77.6% | 53.6% |
| 2325630 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.54 | 39.0 | 3.08e-01 | 79.6% | 35.1% |
| 3958242 | 885.1.1.0 ↗ | a+b complex topology › Transcription factor NusA, N-terminal domain › Transcription factor NusA, N-terminal domain › Transcription factor NusA, N-terminal domain | 0.53 | 42.0 | 3.45e-01 | 95.9% | 45.0% |
| 4464657 | 274.1.1.0 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits | 0.53 | 36.0 | 3.16e-01 | 89.8% | 45.0% |
| 396031 | 4.22.1.1 ↗ | beta barrels › SH3 › Hypothetical protein ORF131 › Hypothetical protein ORF131 › PSV_ORF131-like_dom | 0.53 | 38.0 | 3.10e-01 | 79.6% | 41.6% |
| 5052666 | 9.4.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › D-aminopeptidase, middle and C-terminal domains › D-aminopeptidase, middle and C-terminal domains | 0.52 | 42.0 | 3.53e-01 | 95.9% | 92.6% |
| 5040002 | 223.1.1.14 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 | 0.52 | 37.0 | 2.89e-01 | 75.5% | 33.0% |
| 5065331 | 266.1.1.1 ↗ | a+b two layers › Thymidylate synthase/dCMP hydroxymethylase › Thymidylate synthase/dCMP hydroxymethylase › Thymidylate synthase/dCMP hydroxymethylase › Thymidylat_synt | 0.51 | 38.0 | 2.56e-01 | 83.7% | 83.6% |
| 4532986 | 4232.1.1.1 ↗ | few secondary structure elements › Ribosomal protein bL28-related › Ribosomal protein bL28-related › Ribosomal protein L28 › Ribosomal_L28 | 0.51 | 34.0 | 3.20e-01 | 71.4% | 73.8% |
| 4493573 | 4964.1.1.2 ↗ | alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › RNA_pol | 0.51 | 38.0 | 2.60e-01 | 83.7% | 52.0% |
| 3449382 | 3256.1.1.2 ↗ | a+b two layers › DUF2233 N-terminal domain › DUF2233 N-terminal domain › DUF2233 N-terminal domain › eIF3g | 0.51 | 33.0 | 3.45e-01 | 73.5% | 94.3% |
| 3958863 | 211.1.1.0 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | 0.51 | 34.0 | 2.98e-01 | 77.6% | 39.8% |