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NC_073593.1__YP_010761177.1__QEO79_gp12__00012

Bact-Vir

NC_073593.1__YP_010761177.1__QEO79_gp12__00012

Identity

Accession:
NC_073593 ↗
Kingdom:
phage

Quality

85.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Elesarvirus› Arthrobacter_phage_Elesar

TaxID: 2510522

Cluster

View cluster (43 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 16-49_63-113
PDB
Domain cluster: rep: NC_041949.1__YP_009603211.1__FDH66_gp75__00023__D24-141
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2kz4A00 2.40.10.270 Mainly Beta › Beta Barrel › Thrombin, subunit H › Bacteriophage SPP1 head-tail adaptor protein 0.85 79.0 7.11e-01 100.0% 91.1%
3f3bA00 2.40.10.370 Mainly Beta › Beta Barrel › Thrombin, subunit H › Protein of unknown function DUF3599 0.78 72.0 6.44e-01 100.0% 93.0%
6toaE01 2.40.10.270 Mainly Beta › Beta Barrel › Thrombin, subunit H › Bacteriophage SPP1 head-tail adaptor protein 0.76 67.0 6.40e-01 95.3% 100.0%
4m1xD00 3.30.1360.240 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.69 47.0 5.12e-01 100.0% 84.7%
1fx0B01 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.68 47.0 4.84e-01 71.8% 77.2%
6v04A01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.67 35.0 3.01e-01 100.0% 33.1%
1ywuA00 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.66 54.0 4.76e-01 100.0% 60.8%
1flmA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.63 55.0 4.93e-01 100.0% 85.2%
2vpaA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.61 54.0 4.13e-01 100.0% 65.7%
1e62A01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.58 48.0 4.23e-01 90.6% 70.3%
2x8kA01 2.40.30.200 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.58 52.0 4.85e-01 100.0% 88.6%
2m89A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.57 34.0 2.92e-01 94.1% 37.3%
3q63F00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.56 34.0 2.86e-01 71.8% 36.0%
1h2cA00 2.70.20.20 Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Matrix protein VP40, N-terminal domain 0.56 39.0 3.45e-01 71.8% 88.7%
1pfsA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 35.0 3.69e-01 100.0% 71.8%
3no8A00 2.60.120.820 Mainly Beta › Sandwich › Jelly Rolls › PHR domain 0.53 36.0 2.99e-01 70.6% 80.3%
1d6uA03 2.70.98.20 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain 0.53 46.0 3.02e-01 100.0% 43.2%
3gtyX02 3.10.50.30 Alpha Beta › Roll › Chitinase A; domain 3 › Transcription elongation factor, GreA/GreB, C-terminal domain 0.53 36.0 3.68e-01 71.8% 83.3%
1m0wA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.52 46.0 4.30e-01 100.0% 79.6%
4ojdH03 2.60.40.3980 Mainly Beta › Sandwich › Immunoglobulin-like › Cell-cell fusogen EFF/AFF, domain 3 0.52 39.0 3.70e-01 83.5% 66.3%
3cp7B02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.52 42.0 4.02e-01 100.0% 76.2%
4xrtA02 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.51 31.0 2.58e-01 98.8% 32.5%
ECOD (33)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
119252 1.1.13.3 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_H_T_join 0.85 79.0 7.11e-01 100.0% 91.1%
4032900 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.79 72.0 6.71e-01 100.0% 99.0%
3590201 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.77 71.0 6.48e-01 100.0% 93.5%
4032883 1.1.13.3 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_H_T_join 0.73 67.0 6.25e-01 100.0% 95.2%
4950482 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.69 49.0 5.18e-01 74.1% 85.3%
4965596 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.67 58.0 5.82e-01 100.0% 92.9%
4951403 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.67 58.0 5.68e-01 100.0% 87.8%
5008430 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.67 58.0 5.82e-01 100.0% 92.9%
3602341 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.67 58.0 5.68e-01 100.0% 87.8%
5017556 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.67 57.0 5.75e-01 100.0% 92.9%
4854964 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.65 45.0 4.55e-01 72.9% 70.9%
1883205 1.1.13.19 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Caud_tail_N 0.65 59.0 5.39e-01 100.0% 94.5%
3437290 1.1.17.3 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.63 57.0 4.21e-01 100.0% 41.9%
3611709 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.63 48.0 4.10e-01 84.7% 80.7%
4966449 1.1.13.72 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › CBS 0.63 56.0 5.43e-01 100.0% 91.6%
1063090 1.1.7.7 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.62 49.0 4.18e-01 85.9% 70.5%
3939695 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 42.0 4.14e-01 84.7% 66.7%
4939745 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.61 51.0 3.87e-01 100.0% 36.8%
4137984 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.61 43.0 3.84e-01 74.1% 75.0%
3805340 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.59 48.0 4.18e-01 89.4% 68.5%
184986 1.1.13.4 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Sipho_tail 0.58 52.0 4.60e-01 100.0% 96.0%
4031151 4056.1.1.0 ↗ beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein 0.57 40.0 4.23e-01 74.1% 96.0%
3705968 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.56 49.0 4.17e-01 100.0% 62.8%
3411669 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 43.0 4.00e-01 83.5% 70.0%
3506980 511.1.1.0 ↗ beta sandwiches › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain 0.56 49.0 4.16e-01 100.0% 98.6%
5054016 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 40.0 3.53e-01 83.5% 51.2%
3738953 11.1.1.644 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_Pom152 0.55 42.0 3.75e-01 83.5% 60.8%
5013280 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.54 38.0 3.67e-01 72.9% 72.6%
3397468 11.1.1.822 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF229 0.54 43.0 4.00e-01 85.9% 72.4%
3906962 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.53 37.0 2.70e-01 71.8% 40.4%
3609230 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.52 46.0 3.91e-01 100.0% 69.0%
3629518 11.1.1.187 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › EFF-AFF 0.52 40.0 3.78e-01 83.5% 69.0%
1715836 331.3.1.0 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.51 31.0 2.58e-01 98.8% 32.5%