←Back to structures

NC_073597.1__YP_010761505.1__QEX67_gp08__00008

Bact-Vir

NC_073597.1__YP_010761505.1__QEX67_gp08__00008

Identity

Accession:
NC_073597 ↗
Kingdom:
phage

Quality

77.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Idahovirus› Arthrobacter_phage_Idaho

TaxID: 2565509

Cluster

View cluster (241 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-134
PDB
Domain cluster: representative
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4divV01 2.40.30.200 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.70 63.0 6.24e-01 97.7% 94.9%
1y12B00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.68 62.0 5.85e-01 98.4% 82.7%
2k4qA00 4.10.410.40 Few Secondary Structures › Irregular › Factor Xa Inhibitor › 0.64 57.0 5.29e-01 94.6% 89.1%
1ylnA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.62 46.0 4.88e-01 100.0% 87.7%
6toaE01 2.40.10.270 Mainly Beta › Beta Barrel › Thrombin, subunit H › Bacteriophage SPP1 head-tail adaptor protein 0.60 44.0 4.89e-01 89.9% 100.0%
4p02A03 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.58 43.0 4.44e-01 100.0% 82.0%
1havB02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.56 40.0 4.35e-01 97.7% 92.2%
3f7eA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.56 47.0 4.74e-01 100.0% 92.2%
3r8qA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 35.0 4.15e-01 78.3% 95.5%
4cvuA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 38.0 3.99e-01 84.5% 81.5%
2cuhA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 33.0 3.90e-01 93.8% 95.5%
ECOD (26)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4157825 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.77 71.0 7.10e-01 98.4% 99.2%
4034209 1.1.13.4 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Sipho_tail 0.77 67.0 6.60e-01 92.2% 100.0%
4957560 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.76 70.0 7.03e-01 98.4% 100.0%
2674670 1.1.13.6 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tail_2 0.76 70.0 6.31e-01 100.0% 79.1%
3590380 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.75 70.0 6.18e-01 100.0% 86.1%
3058416 1.1.5.39 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › TssD 0.73 62.0 6.32e-01 97.7% 91.3%
5082881 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.73 65.0 6.66e-01 97.7% 100.0%
2642579 1.1.13.6 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tail_2 0.72 66.0 6.61e-01 99.2% 99.2%
4033579 1.1.13.4 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Sipho_tail 0.71 61.0 6.18e-01 90.7% 100.0%
4929634 1.1.5.47 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_tube_2 0.71 66.0 5.07e-01 99.2% 60.4%
4982153 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.71 65.0 4.99e-01 97.7% 49.6%
1444177 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.70 63.0 6.23e-01 96.1% 94.1%
4873215 1.1.13.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › DUF2001 0.70 64.0 6.27e-01 99.2% 93.6%
4960006 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.70 53.0 5.76e-01 100.0% 95.4%
3096576 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.68 62.0 5.80e-01 100.0% 89.9%
4888732 1.1.13.4 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Sipho_tail 0.68 61.0 5.76e-01 97.7% 83.3%
4952430 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.67 49.0 5.25e-01 96.1% 90.0%
5002750 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.66 51.0 5.55e-01 92.2% 99.0%
3965192 1.1.13.67 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › DUF2460 0.66 55.0 5.81e-01 89.9% 100.0%
261 1.1.17.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.64 42.0 3.58e-01 96.9% 40.6%
3964568 809.1.1.0 ↗ a+b two layers › BLIP-like › beta-lactamase-inhibitor protein, BLIP › beta-lactamase-inhibitor protein, BLIP 0.61 29.0 3.42e-01 96.9% 64.7%
3813135 4.1.1.163 ↗ beta barrels › SH3 › SH3 › SH3 › BURP 0.57 40.0 4.02e-01 100.0% 70.9%
3928764 11.1.1.53 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DOMON 0.53 40.0 4.39e-01 96.1% 96.2%
3418881 304.8.1.66 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › DUF7049 0.52 38.0 4.08e-01 97.7% 89.1%
4958244 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 37.0 3.82e-01 85.3% 78.4%
3923531 4081.1.1.5 ↗ beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N 0.50 40.0 3.40e-01 86.0% 65.9%