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NC_073602.1__YP_010761836.1__QE321_gp149__00054

Bact-Vir

NC_073602.1__YP_010761836.1__QE321_gp149__00054

Identity

Accession:
NC_073602 ↗
Kingdom:
phage

Quality

49.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vandenendeviridae› Pakpunavirus› Pseudomonas_phage_SPA01

TaxID: 3003719

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 3-69
PDB
Domain cluster: rep: NC_009447.1__YP_001210236.1__BcepGomrgene16__00016__D235-292
CATH (34)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1lliA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.63 45.0 4.21e-01 77.6% 61.8%
7xi5A01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.62 44.0 4.78e-01 77.6% 100.0%
3op9A01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.62 44.0 4.44e-01 77.6% 77.9%
1ez0B01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.61 43.0 2.80e-01 74.6% 38.5%
2mqkA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.61 42.0 4.27e-01 73.1% 87.7%
6f8hC00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.61 44.0 4.01e-01 79.1% 60.2%
1aipH03 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.60 42.0 4.71e-01 94.0% 94.2%
3bs3A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.60 43.0 4.45e-01 79.1% 85.0%
4bjqA00 1.10.150.770 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.60 41.0 3.90e-01 70.1% 69.2%
2ebyA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.60 43.0 4.16e-01 79.1% 70.9%
2d5vA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.60 46.0 4.42e-01 86.6% 91.1%
3fyaB00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.59 43.0 4.15e-01 79.1% 74.0%
1r69A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.59 42.0 4.31e-01 77.6% 81.0%
2o8iA00 1.10.3330.10 Mainly Alpha › Orthogonal Bundle › UraD-like › Oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase 0.59 47.0 3.63e-01 88.1% 59.7%
7w5lA01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.58 40.0 2.78e-01 73.1% 58.3%
2r1jL00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.58 42.0 4.22e-01 77.6% 78.8%
7qefA01 3.20.20.300 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycoside hydrolase, family 3, N-terminal domain 0.57 41.0 2.61e-01 77.6% 83.7%
2zj2A03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 39.0 3.61e-01 83.6% 57.1%
2ltuA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.56 42.0 4.34e-01 94.0% 91.9%
2ictA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.56 40.0 3.86e-01 79.1% 66.7%
4pu7A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.56 39.0 3.85e-01 74.6% 74.6%
3h1qA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.56 42.0 3.62e-01 85.1% 67.8%
2yzsA02 1.20.120.920 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain 0.55 48.0 3.36e-01 100.0% 53.1%
2ox6D00 1.10.3100.10 Mainly Alpha › Orthogonal Bundle › Putative cytoplasmic protein › Putative cytoplasmic protein 0.55 46.0 3.62e-01 100.0% 91.9%
3wvoC02 1.10.132.100 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › 0.55 45.0 3.80e-01 100.0% 79.2%
2o38A01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.54 38.0 3.91e-01 77.6% 84.6%
3oc2A01 3.90.1310.10 Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › Penicillin-binding protein 2a (Domain 2) 0.53 38.0 2.93e-01 77.6% 34.1%
1zhcA00 6.10.280.50 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.53 38.0 3.70e-01 76.1% 84.2%
3h36A00 1.10.10.400 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Polyribonucleotide nucleotidyltransferase, RNA-binding domain 0.53 37.0 3.60e-01 74.6% 64.1%
2n80A00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.51 41.0 3.75e-01 92.5% 73.4%
3i4uA01 1.20.120.1080 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.51 35.0 3.12e-01 91.0% 48.5%
4bwrA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.51 39.0 2.36e-01 82.1% 16.5%
4hehA01 1.10.1240.10 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain 0.51 40.0 3.78e-01 86.6% 97.6%
4neoA00 1.10.1200.10 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like 0.51 38.0 3.60e-01 82.1% 86.7%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3963765 159.1.2.5 ↗ alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related › TMP_3 0.75 64.0 4.66e-01 97.0% 37.4%
5052156 101.1.4.0 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.66 49.0 5.08e-01 79.1% 91.7%
3588628 101.1.4.0 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.63 45.0 4.79e-01 77.6% 94.8%
5082802 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.62 53.0 4.71e-01 100.0% 72.0%
4966498 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.61 51.0 4.69e-01 100.0% 74.7%
4945219 101.1.4.0 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.61 42.0 4.41e-01 77.6% 83.3%
4212800 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.60 43.0 3.77e-01 79.1% 51.9%
3306298 101.1.4.53 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › PF29035 0.59 43.0 4.49e-01 79.1% 93.3%
3980119 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.58 42.0 4.21e-01 79.1% 75.7%
4952242 101.1.4.17 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_26 0.58 41.0 4.12e-01 79.1% 77.1%
3958941 101.1.4.0 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.56 39.0 3.72e-01 73.1% 62.5%
1030234 103.1.1.21 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › AMPK_alpha_AID 0.56 42.0 4.34e-01 94.0% 91.9%
3278243 101.1.4.10 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › DUF1870 0.56 44.0 3.75e-01 91.0% 77.5%
3217233 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.55 39.0 3.65e-01 80.6% 58.9%
3986597 101.1.4.0 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.54 42.0 3.97e-01 89.6% 97.6%
5003027 4995.1.1.1 ↗ alpha arrays › Methionine synthase domain-like › Methionine synthase domain-like › Methionine synthase domain-like › B12-binding_2 0.53 39.0 3.60e-01 79.1% 92.2%
3719797 103.1.1.2 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › CUE 0.53 35.0 3.63e-01 83.6% 72.3%
4319059 103.5.1.2 ↗ alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like › DmpG_comm 0.52 38.0 3.88e-01 89.6% 84.1%
4147304 103.5.1.2 ↗ alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like › DmpG_comm 0.52 38.0 3.92e-01 91.0% 90.0%
None — 0.51 40.0 2.56e-01 86.6% 71.1%
3839889 601.51.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-helical domain in phase 1 flagellin › alpha-helical domain in phase 1 flagellin 0.51 38.0 3.12e-01 95.5% 40.0%
3609974 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.51 32.0 3.33e-01 74.6% 70.0%
5063047 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.51 37.0 3.30e-01 79.1% 81.0%
D2 medium residues 268-328
PDB