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NC_073617.1__YP_010764420.1__QE343_gp006__00006

Bact-Vir

NC_073617.1__YP_010764420.1__QE343_gp006__00006

Identity

Accession:
NC_073617 ↗
Kingdom:
phage

Quality

90.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vandenendeviridae› Pakpunavirus› Pseudomonas_phage_YS35

TaxID: 2036050

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-52
PDB
Domain cluster: representative
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5n1qB02 3.30.70.470 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 41.0 2.82e-01 79.5% 23.1%
3ja8204 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 34.0 2.03e-01 81.8% 7.6%
1zq1A02 3.40.50.1170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › L-asparaginase, N-terminal domain 0.54 41.0 2.81e-01 100.0% 41.4%
2f2hA04 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.54 39.0 3.21e-01 100.0% 37.6%
2qe8A00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.53 43.0 2.62e-01 95.5% 26.1%
1pvgA01 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.53 44.0 2.81e-01 100.0% 26.2%
3g2bA00 1.10.10.1150 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Coenzyme PQQ synthesis protein D (PqqD) 0.52 41.0 3.41e-01 95.5% 48.9%
4obmA00 3.40.630.190 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › LCP protein 0.52 37.0 2.43e-01 84.1% 50.8%
2c7yA00 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.52 39.0 2.37e-01 95.5% 94.9%
3bwnD01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.52 34.0 2.54e-01 70.5% 43.1%
7uqyB01 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.51 37.0 2.56e-01 88.6% 27.1%
ECOD (26)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3656521 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.60 42.0 3.48e-01 79.5% 38.9%
3204533 304.24.1.0 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.60 44.0 3.82e-01 100.0% 49.3%
2969764 3525.1.1.0 ↗ alpha arrays › Bromodomain-containing protein 4 ET domain › Bromodomain-containing protein 4 ET domain › Bromodomain-containing protein 4 ET domain 0.58 36.0 3.08e-01 100.0% 37.8%
4522026 3585.1.1.0 ↗ a+b two layers › DNA polymerase III C-terminal domain › DNA polymerase III C-terminal domain › DNA polymerase III C-terminal domain 0.58 40.0 3.68e-01 90.9% 52.3%
3929452 394.1.1.0 ↗ few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins 0.56 42.0 3.92e-01 93.2% 90.8%
5049075 219.1.1.13 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.56 46.0 3.15e-01 100.0% 68.3%
4279139 3819.2.1.1 ↗ alpha complex topology › CRISPR-associated endonuclease Cas9 alpha-helical lobe › F. novicida CRISPR-associated endonuclease Cas9 alpha-helical lobe › F. novicida CRISPR-associated endonuclease Cas9 alpha-helical lobe › Csx12 0.55 44.0 2.40e-01 90.9% 48.1%
3591893 2008.1.1.107 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NERD 0.55 37.0 2.58e-01 70.5% 21.2%
3602244 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.55 41.0 3.06e-01 100.0% 28.5%
3173318 309.1.1.2 ↗ a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase › Peptidase_M16,Peptidase_M16_C 0.53 38.0 2.05e-01 77.3% 8.8%
3716928 2008.1.1.107 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NERD 0.53 35.0 2.45e-01 70.5% 18.0%
3600992 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.53 37.0 2.54e-01 75.0% 68.4%
5040906 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.53 33.0 3.41e-01 97.7% 61.5%
None — 0.52 35.0 2.28e-01 70.5% 26.8%
3924089 198.1.1.4 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like › DUF3456 0.52 42.0 3.05e-01 95.5% 73.1%
3250585 109.4.1.791 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_17 0.52 41.0 2.38e-01 97.7% 8.8%
3527717 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.52 36.0 3.60e-01 100.0% 73.6%
2028124 223.3.1.8 ↗ a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Beta-lactamase2 0.51 37.0 3.75e-01 100.0% 84.1%
4083451 192.2.1.20 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › ASNSD1-SEP 0.51 37.0 3.26e-01 97.7% 47.5%
3182769 4019.1.1.1 ↗ alpha complex topology › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › Beta-lactamase 0.51 42.0 2.54e-01 100.0% 11.2%
3351676 5001.1.1.62 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › YIF1 0.51 41.0 2.81e-01 97.7% 37.0%
4400919 304.114.1.0 ↗ a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain 0.51 30.0 2.58e-01 97.7% 29.3%
3610727 2006.1.1.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like 0.51 39.0 2.26e-01 86.4% 34.8%
3592362 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.51 38.0 2.40e-01 93.2% 27.9%
3502058 2485.1.1.0 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.50 34.0 3.01e-01 70.5% 55.4%
3507945 221.4.1.0 ↗ a+b two layers › beta-Grasp › Nudix › Nudix 0.50 35.0 2.37e-01 72.7% 15.3%