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NC_073673.1__YP_010765811.1__QGM56_gp52__00052

Bact-Vir

NC_073673.1__YP_010765811.1__QGM56_gp52__00052

Identity

Accession:
NC_073673 ↗
Kingdom:
phage

Quality

84.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Hollowayvirus› Pseudomonas_phage_vB_PaeP_E220

TaxID: 2034343

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 18-76
PDB
Domain cluster: representative
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2lydA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.68 59.0 4.55e-01 100.0% 60.4%
4qmaA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.62 46.0 3.46e-01 100.0% 32.2%
1b7tA02 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.57 42.0 4.43e-01 100.0% 90.4%
1cv8A00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.57 47.0 3.55e-01 100.0% 39.9%
3w1eA03 2.40.10.410 Mainly Beta › Beta Barrel › Thrombin, subunit H › FlgT, C-terminal domain 0.57 49.0 4.38e-01 100.0% 68.5%
7pzaA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.56 39.0 3.15e-01 100.0% 36.9%
4pn0C00 3.20.100.10 Alpha Beta › Alpha-Beta Barrel › mRNA Triphosphatase Cet1; Chain A › mRNA triphosphatase Cet1-like 0.56 39.0 2.64e-01 76.3% 44.5%
2kxqA01 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.55 32.0 3.52e-01 86.4% 100.0%
3njaA02 2.10.70.100 Mainly Beta › Ribbon › Complement Module; domain 1 › 0.54 30.0 3.29e-01 72.9% 65.2%
1yn8A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 45.0 4.57e-01 100.0% 96.6%
1krlA00 6.20.50.130 Special › Other non-globular › N-terminal domain of TfIIb › 0.53 31.0 3.43e-01 84.7% 75.0%
4krtB03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 46.0 4.43e-01 100.0% 100.0%
6ghmC02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 45.0 4.43e-01 100.0% 90.6%
2derA03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.52 38.0 3.41e-01 100.0% 54.0%
1wfwA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.52 46.0 4.28e-01 100.0% 82.4%
5o99A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.52 43.0 4.30e-01 100.0% 91.7%
3tdgA01 3.10.450.520 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 35.0 3.46e-01 98.3% 66.7%
2wacA01 2.40.50.90 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.51 40.0 3.08e-01 84.7% 61.9%
1ng2A01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.50 34.0 3.92e-01 74.6% 95.5%
ECOD (35)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3414887 220.1.1.11 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Rpn13_ADRM1_Pru 0.63 53.0 3.50e-01 100.0% 31.3%
3188774 4.1.1.146 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_uL24m-like 0.57 43.0 2.85e-01 88.1% 41.0%
3845542 220.1.1.38 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › UCH_N 0.57 48.0 4.14e-01 100.0% 81.0%
4962087 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.56 41.0 4.11e-01 88.1% 76.7%
5018173 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.55 41.0 3.46e-01 86.4% 47.0%
3471615 220.1.1.158 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_LRR1 0.55 46.0 3.84e-01 100.0% 71.3%
2866962 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.55 46.0 3.82e-01 100.0% 51.9%
4870495 304.169.1.1 ↗ a+b two layers › Alpha-beta plaits › RspWYL1 C-terminal domain › RspWYL1 C-terminal domain › WYL 0.55 45.0 3.78e-01 100.0% 51.9%
3570700 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.55 43.0 3.48e-01 100.0% 44.3%
3234434 1.1.5.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin 0.55 47.0 3.07e-01 100.0% 23.3%
3670468 4.1.1.332 ↗ beta barrels › SH3 › SH3 › SH3 › Peptidase_C1 0.55 48.0 3.76e-01 100.0% 54.6%
3557677 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.54 48.0 4.53e-01 100.0% 88.6%
3849311 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.53 46.0 4.58e-01 100.0% 95.0%
5038361 4294.1.1.13 ↗ few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like › Zn_ribbon_TFIIB 0.52 33.0 3.59e-01 83.1% 84.4%
5029166 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 46.0 4.29e-01 100.0% 89.2%
3347601 216.1.1.3 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UEV 0.52 42.0 3.17e-01 91.5% 51.6%
531 4.1.1.281 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_KALRN 0.52 46.0 4.28e-01 100.0% 82.4%
3526953 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.52 45.0 4.49e-01 100.0% 92.1%
3777744 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.52 44.0 3.89e-01 100.0% 63.3%
3918340 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.52 45.0 4.31e-01 100.0% 82.9%
3403600 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.52 45.0 2.89e-01 100.0% 24.1%
3482676 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 44.0 4.41e-01 100.0% 96.7%
3634173 216.1.1.3 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UEV 0.51 41.0 3.10e-01 91.5% 52.3%
3702517 11.2.1.87 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › SpoV 0.51 41.0 3.27e-01 100.0% 42.7%
3939132 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.51 45.0 3.80e-01 100.0% 59.0%
3700010 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 38.0 2.61e-01 88.1% 38.2%
5078649 219.1.1.13 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.51 43.0 3.07e-01 100.0% 34.5%
3594081 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 41.0 3.84e-01 96.6% 95.0%
3936225 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 44.0 4.18e-01 100.0% 82.9%
3486189 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.50 43.0 4.35e-01 98.3% 96.7%
3490141 216.1.1.3 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UEV 0.50 40.0 3.10e-01 91.5% 54.5%
3766868 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.50 44.0 3.87e-01 100.0% 66.7%
5052132 512.1.1.0 ↗ a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) 0.50 36.0 3.04e-01 79.7% 49.1%
None — 0.50 45.0 2.86e-01 100.0% 23.8%
3895155 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.50 43.0 3.98e-01 100.0% 73.8%