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NC_073676.1__YP_010765983.1__QGM59_gp29__00029

Bact-Vir

NC_073676.1__YP_010765983.1__QGM59_gp29__00029

Identity

Accession:
NC_073676 ↗
Kingdom:
phage

Quality

70.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Hollowayvirus› Pseudomonas_phage_Epa33

TaxID: 2719194

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 3-36
PDB
Domain cluster: representative
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2xjyA01 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.83 67.0 5.46e-01 91.2% 69.8%
2d8yA01 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.82 68.0 5.29e-01 94.1% 61.1%
4jcjC02 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.81 63.0 5.24e-01 85.3% 70.7%
2d8xA00 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.81 71.0 5.58e-01 100.0% 64.3%
2g43B01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.78 63.0 4.61e-01 97.1% 45.9%
2dj7A00 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.78 65.0 5.00e-01 97.1% 55.0%
2gviA03 3.30.60.20 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.78 58.0 5.86e-01 85.3% 94.1%
2ecjA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.77 64.0 5.45e-01 97.1% 60.3%
1x62A01 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.77 61.0 5.20e-01 94.1% 71.7%
2miuA00 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.76 59.0 4.38e-01 94.1% 43.9%
2cuqA00 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.75 62.0 4.78e-01 97.1% 55.0%
1x68A00 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.69 59.0 4.59e-01 100.0% 64.5%
2ds5A00 6.20.220.10 Special › Other non-globular › Erythroid Transcription Factor GATA-1; Chain A › ClpX chaperone, C4-type zinc finger domain 0.68 51.0 4.94e-01 94.1% 83.7%
4l0mA00 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.54 44.0 2.72e-01 100.0% 67.8%
5jh8A02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.53 42.0 3.51e-01 100.0% 56.7%
3s24A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 38.0 2.93e-01 85.3% 94.7%
8fwpB01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 42.0 2.61e-01 100.0% 100.0%
3u37A02 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.51 39.0 2.34e-01 88.2% 15.3%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4026572 377.1.3.1 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › Zinc-binding subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › zf-FPG_IleRS 0.94 84.0 8.31e-01 97.1% 94.3%
5015844 375.1.5.2 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Hypothetical protein Ta0289-C › Zn_ribbon_RRN7 0.91 69.0 7.38e-01 82.4% 100.0%
5013172 375.1.5.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Hypothetical protein Ta0289-C 0.89 70.0 6.98e-01 88.2% 97.1%
3697191 377.1.1.5 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM 0.89 73.0 7.25e-01 91.2% 94.3%
3211674 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.82 61.0 6.30e-01 82.4% 100.0%
4224305 377.1.1.5 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM 0.81 66.0 6.62e-01 94.1% 94.3%
3999023 377.1.1.5 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM 0.81 63.0 5.80e-01 88.2% 73.3%
4410490 3961.1.1.0 ↗ 0.80 66.0 4.80e-01 97.1% 34.0%
4000690 377.1.1.5 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM 0.77 61.0 5.47e-01 91.2% 96.0%
5061512 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.77 64.0 6.17e-01 97.1% 95.0%
3790734 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.76 62.0 4.64e-01 100.0% 41.1%
3619326 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.76 62.0 4.64e-01 100.0% 46.3%
3933920 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.74 59.0 4.51e-01 100.0% 36.8%
3685711 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.74 61.0 5.72e-01 100.0% 82.2%
3630382 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.71 53.0 5.46e-01 88.2% 100.0%
3243797 377.1.1.28 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Pcf11_C 0.66 52.0 4.62e-01 97.1% 94.5%
3301457 931.1.1.7 ↗ few secondary structure elements › Metallothionein › Metallothionein › Metallothionein › VATC 0.63 48.0 4.79e-01 91.2% 97.1%
5019242 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.57 41.0 3.69e-01 100.0% 54.0%
3405764 377.9.1.9 ↗ few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like › MYND_ZMYND11_ZMYD8 0.54 40.0 3.98e-01 97.1% 87.5%
3492984 377.9.1.9 ↗ few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like › MYND_ZMYND11_ZMYD8 0.54 40.0 3.62e-01 97.1% 58.3%
3921605 377.9.1.9 ↗ few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like › MYND_ZMYND11_ZMYD8 0.53 40.0 3.00e-01 97.1% 30.4%