←Back to structures

NC_073751.1__YP_010768554.1__QII04_gp03__00003

Bact-Vir

NC_073751.1__YP_010768554.1__QII04_gp03__00003

Identity

Accession:
NC_073751 ↗
Kingdom:
phage

Quality

93.4 mean pLDDT

Taxonomy

Loebvirae› Hofneiviricota› Faserviricetes› Tubulavirales› Inoviridae› Lineavirus› Erwinia_phage_PEar6

TaxID: 2776820

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-86
PDB
Domain cluster: rep: NC_074762.1__YP_010774576.1__QJ534_gp02__00002__D2-84
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02303.25 best Phage_DNA_bind 83.9 1.10e-23 95.2% 95.1%
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ae2A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.96 91.0 9.06e-01 100.0% 96.5%
3rd4B00 2.40.50.660 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.71 57.0 5.80e-01 100.0% 89.0%
3pnrA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.59 41.0 2.98e-01 100.0% 25.4%
4z9cB00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.59 52.0 4.74e-01 100.0% 84.3%
1fguB02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 50.0 4.44e-01 100.0% 66.1%
2e12A00 2.30.30.720 Mainly Beta › Roll › SH3 type barrels. › Protein of unknown function (DUF3247) 0.57 36.0 3.53e-01 70.2% 57.0%
3kf8A00 2.40.50.1040 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.56 49.0 3.73e-01 100.0% 44.4%
4gxbA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 37.0 3.53e-01 70.2% 59.6%
4ebgA00 3.10.450.560 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 33.0 3.17e-01 94.0% 52.6%
1sr4B00 3.60.10.10 Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase 0.52 42.0 3.09e-01 92.9% 81.8%
4bgjA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.51 43.0 3.92e-01 96.4% 94.1%
5hp6A01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.50 43.0 2.95e-01 98.8% 98.8%
1tzzB01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.50 43.0 3.88e-01 97.6% 95.8%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
376 2.1.1.20 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Phage_DNA_bind 0.96 91.0 8.98e-01 100.0% 95.4%
4405256 2.1.1.20 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Phage_DNA_bind 0.89 84.0 8.36e-01 100.0% 97.6%
4593266 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.67 47.0 4.88e-01 98.8% 81.3%
4995179 236.3.1.1 ↗ beta barrels › GroES-like › AF1531-like › AF1531-like › DUF655 0.66 50.0 5.06e-01 95.2% 81.2%
3678038 2.1.1.76 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 0.64 50.0 5.27e-01 94.0% 96.0%
3317450 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.63 50.0 4.62e-01 100.0% 67.3%
3616990 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.60 49.0 4.48e-01 89.3% 80.9%
4927342 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.59 50.0 4.93e-01 100.0% 88.9%
3759486 330.1.1.2 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Ribosomal_S5 0.59 38.0 3.91e-01 97.6% 68.8%
3997614 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.59 49.0 4.42e-01 100.0% 65.8%
3640971 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.58 50.0 4.13e-01 100.0% 52.9%
4981345 330.1.1.2 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Ribosomal_S5 0.57 36.0 4.24e-01 97.6% 98.2%
3917310 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.55 35.0 3.86e-01 96.4% 83.1%
None — 0.55 48.0 2.81e-01 100.0% 23.1%
3802227 2484.1.1.197 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1, DNA_pol_B_exo2 0.55 48.0 2.75e-01 100.0% 21.9%
3243790 239.3.1.0 ↗ beta barrels › Ribosomal protein L25-like › FAS1 domain › FAS1 domain 0.52 37.0 2.95e-01 75.0% 61.1%
5083710 2004.1.1.198 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.52 32.0 2.31e-01 89.3% 19.6%
3315951 220.1.1.86 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › ZGRF1-like_N 0.52 32.0 3.29e-01 90.5% 63.3%