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NC_074561.1__YP_010771386.1__QIM33_gp16__00016

Bact-Vir

NC_074561.1__YP_010771386.1__QIM33_gp16__00016

Identity

Accession:
NC_074561 ↗
Kingdom:
phage

Quality

82.4 mean pLDDT

Taxonomy

Bamfordvirae› Preplasmiviricota› Tectiliviricetes› Kalamavirales› Tectiviridae› Betatectivirus› Bacillus_phage_Sole

TaxID: 1260287

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 2-83
PDB
Domain cluster: representative
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2j3tD01 3.30.450.70 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.62 36.0 3.03e-01 70.7% 35.8%
7pjjA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.61 44.0 3.78e-01 75.6% 67.4%
2x5pA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 39.0 3.61e-01 70.7% 72.1%
4c23B01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.56 39.0 2.86e-01 72.0% 50.0%
6fwvA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 38.0 3.71e-01 70.7% 72.2%
3m62B00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.55 35.0 3.74e-01 70.7% 73.6%
1j3wC00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.55 39.0 3.34e-01 74.4% 46.6%
7ct1A01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.55 37.0 3.71e-01 70.7% 71.8%
3rj2X00 2.60.120.1150 Mainly Beta › Sandwich › Jelly Rolls › 0.53 40.0 3.43e-01 81.7% 77.4%
7c2fB01 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.52 36.0 3.55e-01 70.7% 93.0%
5xbfA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.52 35.0 3.50e-01 70.7% 69.0%
1aolA00 3.90.310.10 Alpha Beta › Alpha-Beta Complex › Viral Glycoprotein Gp70 › ENV polyprotein, receptor-binding domain 0.52 36.0 2.61e-01 72.0% 80.7%
3m70A01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.51 34.0 3.10e-01 73.2% 51.9%
2uytA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.51 38.0 2.84e-01 82.9% 58.3%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3948638 223.8.1.4 ↗ a+b three layers › Profilin-like › LapD periplasmic domain › LapD periplasmic domain › GAPES3 0.83 44.0 3.40e-01 91.5% 27.5%
3978824 223.8.1.2 ↗ a+b three layers › Profilin-like › LapD periplasmic domain › LapD periplasmic domain › CHASE8 0.76 43.0 3.26e-01 91.5% 27.6%
3967419 223.1.1.18 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › sCache_4 0.69 49.0 3.94e-01 73.2% 82.0%
4413356 223.1.1.18 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › sCache_4 0.68 47.0 3.53e-01 70.7% 85.4%
3970378 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.66 45.0 3.53e-01 70.7% 78.8%
3272511 223.2.1.8 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Sybindin 0.61 39.0 3.29e-01 73.2% 38.6%
4943458 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.61 42.0 3.59e-01 74.4% 45.4%
3701193 223.2.1.8 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Sybindin 0.59 37.0 3.06e-01 90.2% 35.4%
3405488 2002.1.1.42 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › A_deaminase,A_deaminase_N 0.59 40.0 2.50e-01 70.7% 50.9%
5036714 2492.1.1.16 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › TM1506 0.58 41.0 3.65e-01 75.6% 85.0%
5036491 2484.1.1.6 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FGGY_N 0.58 39.0 2.82e-01 70.7% 46.8%
5071005 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.57 34.0 2.88e-01 84.1% 36.9%
3484640 10.12.1.1 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding 0.57 49.0 3.63e-01 100.0% 51.5%
4509186 10.32.1.8 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CBM_4_9 0.56 40.0 3.12e-01 74.4% 45.9%
3596920 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.56 38.0 3.46e-01 70.7% 85.5%
3863499 11.1.1.1303 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › A2M, MG2, A2M_BRD, MG4, MG3 0.55 45.0 2.62e-01 89.0% 77.0%
3532490 11.1.1.877 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › A2M, MG2, A2M_BRD, MG4 0.55 44.0 2.63e-01 87.8% 71.7%
3966472 223.8.1.2 ↗ a+b three layers › Profilin-like › LapD periplasmic domain › LapD periplasmic domain › CHASE8 0.53 46.0 3.54e-01 92.7% 52.9%
3972503 10.12.1.1 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding 0.51 41.0 3.53e-01 89.0% 89.6%
3848014 712.1.1.1 ↗ beta sandwiches › ENV polyprotein, receptor-binding domain › ENV polyprotein, receptor-binding domain › ENV polyprotein, receptor-binding domain › TLV_coat 0.51 35.0 2.65e-01 72.0% 84.0%