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YP_010771751.1

Arc-Vir

NC_074632__YP_010771751.1__QIT28-gp08__00008

Identity

Accession:
NC_074632 ↗
Protein ID:
YP_010771751.1 ↗
Kingdom:
archaea

Quality

79.9 mean pLDDT

Taxonomy

Zilligvirae› Taleaviricota› Tokiviricetes› Ligamenvirales› Rudiviridae› Hoswirudivirus› Acidianus_rod-shaped_virus_3

TaxID: 2730617

Cluster

View cluster (19 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-94
PDB
Domain cluster: rep: NC_028883.1__YP_009206170.1__PHIMMP01_20051__00052__D2-102
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1u9pA00 1.10.1220.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant › Met repressor-like 0.71 59.0 5.70e-01 100.0% 79.2%
2rh3A00 1.10.1220.190 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant › VirC2, RHH domain 0.70 62.0 5.52e-01 98.8% 90.9%
2efvA00 3.30.70.3260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Uncharacterised protein PF10802, DUF2540 0.68 54.0 5.50e-01 100.0% 91.5%
1qo0D02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 36.0 4.81e-01 95.3% 100.0%
6wshA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 35.0 4.32e-01 95.3% 83.6%
1s8nA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 35.0 4.19e-01 96.5% 79.3%
3kdgA02 3.30.1370.100 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › MutL, C-terminal domain, regulatory subdomain 0.61 43.0 4.20e-01 100.0% 67.0%
4errB00 1.20.58.1190 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.55 25.0 2.60e-01 72.1% 43.4%
1j4wA01 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.55 41.0 4.39e-01 100.0% 93.2%
3mvcB00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.53 44.0 3.70e-01 91.9% 73.4%
2dgrA01 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.52 37.0 4.06e-01 100.0% 97.0%
2cteA01 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.52 38.0 3.98e-01 100.0% 83.5%
7aj9A01 1.10.101.10 Mainly Alpha › Orthogonal Bundle › Muramoyl-pentapeptide Carboxypeptidase; domain 1 › PGBD-like superfamily/PGBD 0.52 35.0 3.84e-01 77.9% 89.6%
2anrA01 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.51 39.0 4.02e-01 100.0% 87.5%
2jzxA02 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.51 38.0 4.00e-01 100.0% 88.6%
3hgtA00 3.40.50.12360 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.51 41.0 2.90e-01 89.5% 43.4%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4373529 101.1.11.43 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix › TraY 0.79 72.0 6.86e-01 100.0% 92.0%
2869 101.1.11.8 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix › VirC2 0.70 62.0 5.52e-01 98.8% 90.9%
5016958 101.1.11.17 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix › DUF2540 0.68 54.0 5.57e-01 100.0% 93.8%
2871 101.1.11.17 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix › DUF2540 0.68 54.0 5.50e-01 100.0% 91.5%
5016567 101.1.11.17 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix › DUF2540 0.67 52.0 5.41e-01 100.0% 92.5%
3243442 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.65 58.0 5.23e-01 100.0% 73.9%
4191067 101.1.11.112 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix › SGT1 0.64 56.0 4.71e-01 100.0% 74.8%
4326331 101.1.11.112 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix › SGT1 0.64 55.0 4.92e-01 100.0% 82.3%
4009653 230.5.1.3 ↗ a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain › FliL 0.57 44.0 4.19e-01 100.0% 71.7%
4972750 304.12.1.17 ↗ a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 › GYD 0.55 43.0 4.19e-01 100.0% 76.8%
3755164 327.11.2.1 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 0.55 39.0 4.15e-01 97.7% 86.7%
3511169 327.11.2.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.54 40.0 4.06e-01 100.0% 82.4%
5063669 327.11.2.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.53 39.0 4.14e-01 98.8% 89.3%
3298078 327.11.2.1 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 0.53 42.0 3.95e-01 100.0% 70.5%
2849646 2003.1.1.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.53 39.0 2.78e-01 80.2% 56.4%
3704048 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.52 44.0 4.42e-01 100.0% 94.1%
3228492 327.11.2.1 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 0.52 40.0 4.11e-01 100.0% 84.7%
3473604 327.11.2.1 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 0.52 40.0 4.19e-01 100.0% 94.7%
3661545 327.11.2.1 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 0.51 40.0 3.85e-01 100.0% 73.0%
3679896 327.11.2.1 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 0.51 40.0 4.08e-01 100.0% 86.9%
3798223 327.11.2.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.51 39.0 3.72e-01 100.0% 71.0%
4111686 327.11.2.1 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 0.51 39.0 3.68e-01 100.0% 66.4%
4028343 327.11.2.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.50 40.0 4.14e-01 100.0% 91.3%
3178516 327.11.2.1 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 0.50 39.0 4.07e-01 100.0% 91.3%