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YP_010771756.1
Arc-VirNC_074632__YP_010771756.1__QIT28-gp13__00013
Identity
- Accession:
- NC_074632 ↗
- Protein ID:
- YP_010771756.1 ↗
- Kingdom:
- archaea
Quality
91.1
mean pLDDT
Taxonomy
Zilligvirae›
Taleaviricota›
Tokiviricetes›
Ligamenvirales›
Rudiviridae›
Hoswirudivirus›
Acidianus_rod-shaped_virus_3
TaxID: 2730617
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 30-107
Domain cluster:
representative
CATH (42)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3fblA00 | 1.20.58.800 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.92 | 68.0 | 6.74e-01 | 76.9% | 78.0% |
| 3r2cA00 | 1.10.940.10 | Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like | 0.80 | 61.0 | 4.94e-01 | 80.8% | 44.9% |
| 1txuA01 | 1.10.246.120 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.79 | 59.0 | 5.55e-01 | 79.5% | 81.9% |
| 8ek4A01 | 1.20.120.20 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Apolipoprotein | 0.72 | 53.0 | 4.43e-01 | 78.2% | 85.0% |
| 3dtoA01 | 1.10.472.50 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › HD-domain/PDEase-like | 0.71 | 47.0 | 4.56e-01 | 71.8% | 60.2% |
| 2a2fX02 | 1.20.58.670 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Dsl1p vesicle tethering complex, Tip20p subunit, domain D | 0.70 | 62.0 | 5.19e-01 | 96.2% | 88.4% |
| 3k2nA00 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.69 | 52.0 | 3.94e-01 | 78.2% | 93.8% |
| 2pjqA01 | 1.10.472.50 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › HD-domain/PDEase-like | 0.69 | 46.0 | 4.47e-01 | 74.4% | 60.7% |
| 3djbA01 | 1.10.472.50 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › HD-domain/PDEase-like | 0.69 | 48.0 | 4.51e-01 | 73.1% | 62.5% |
| 7ccmB01 | 1.10.437.10 | Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like | 0.68 | 49.0 | 4.01e-01 | 75.6% | 51.7% |
| 6pw7A01 | 1.10.238.180 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › | 0.68 | 38.0 | 3.89e-01 | 70.5% | 57.3% |
| 2a3vB01 | 1.10.150.130 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain | 0.67 | 44.0 | 4.16e-01 | 75.6% | 55.3% |
| 2c42A03 | 3.40.920.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III | 0.66 | 50.0 | 3.64e-01 | 80.8% | 30.2% |
| 3juiA00 | 1.25.40.180 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.65 | 58.0 | 4.52e-01 | 100.0% | 83.3% |
| 4adnA01 | 1.20.1280.250 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.63 | 49.0 | 4.75e-01 | 83.3% | 78.8% |
| 1xwmA00 | 1.20.58.220 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 | 0.62 | 53.0 | 3.92e-01 | 94.9% | 98.1% |
| 3cx5A02 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.62 | 44.0 | 3.18e-01 | 73.1% | 66.8% |
| 1zp2A02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.62 | 44.0 | 3.94e-01 | 85.9% | 52.7% |
| 1h6gA01 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.62 | 46.0 | 4.09e-01 | 82.1% | 73.9% |
| 4g12A02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.62 | 55.0 | 4.46e-01 | 98.7% | 65.1% |
| 4nnzA01 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.61 | 43.0 | 3.22e-01 | 74.4% | 60.5% |
| 3onjA00 | 1.20.58.400 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › t-snare proteins | 0.60 | 42.0 | 4.01e-01 | 74.4% | 88.7% |
| 1xdpA01 | 1.20.58.310 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Polyphosphate kinase N-terminal domain | 0.60 | 44.0 | 4.02e-01 | 78.2% | 84.8% |
| 3tacB01 | 1.10.150.50 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 | 0.60 | 39.0 | 3.35e-01 | 82.1% | 40.2% |
| 1rz4A01 | 1.25.40.250 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › ARM repeat; domain 1 | 0.59 | 43.0 | 3.80e-01 | 84.6% | 50.8% |
| 4pxoA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.59 | 51.0 | 4.33e-01 | 97.4% | 89.3% |
| 3axjB01 | 1.20.58.190 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 1 | 0.57 | 50.0 | 4.09e-01 | 100.0% | 67.7% |
| 4mozD00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.57 | 50.0 | 3.39e-01 | 100.0% | 66.5% |
| 4g1tA01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.56 | 45.0 | 3.92e-01 | 89.7% | 61.8% |
| 1qsdA00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.55 | 39.0 | 3.58e-01 | 73.1% | 97.1% |
| 3llkA02 | 1.20.120.310 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › ERV/ALR sulfhydryl oxidase domain | 0.54 | 46.0 | 3.82e-01 | 94.9% | 57.3% |
| 3b9qA01 | 1.20.120.140 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain | 0.54 | 48.0 | 4.66e-01 | 100.0% | 94.4% |
| 7dfeA01 | 1.10.274.60 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, repetitive domain | 0.54 | 44.0 | 3.77e-01 | 96.2% | 55.1% |
| 3ddhA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.54 | 39.0 | 3.93e-01 | 78.2% | 80.2% |
| 1tfkB00 | 1.20.120.650 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Colicin D | 0.54 | 43.0 | 4.19e-01 | 87.2% | 96.5% |
| 2qdjA03 | 1.10.472.140 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › | 0.53 | 41.0 | 3.67e-01 | 84.6% | 58.6% |
| 1iyhB02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.53 | 44.0 | 4.04e-01 | 96.2% | 100.0% |
| 1j8yF01 | 1.20.120.140 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain | 0.53 | 44.0 | 4.34e-01 | 93.6% | 98.8% |
| 2yhsA01 | 1.20.120.140 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain | 0.52 | 46.0 | 4.28e-01 | 100.0% | 85.6% |
| 1n5uA05 | 1.10.246.10 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.51 | 44.0 | 3.90e-01 | 98.7% | 66.1% |
| 4wr4A02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.51 | 44.0 | 4.04e-01 | 100.0% | 99.0% |
| 6cy5A01 | 1.20.120.140 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain | 0.50 | 44.0 | 4.29e-01 | 100.0% | 91.0% |
ECOD (34)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2096499 | 3273.1.1.2 ↗ | alpha arrays › Filamentous archaeal viruses coat proteins › Filamentous archaeal viruses coat proteins › Filamentous archaeal viruses coat proteins › MCP_C | 0.92 | 68.0 | 6.74e-01 | 76.9% | 78.0% |
| 5001060 | 1134.1.1.0 ↗ | alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Eukaryotic C-Ala helical domain | 0.73 | 52.0 | 5.22e-01 | 74.4% | 80.8% |
| 3451070 | 226.1.1.3 ↗ | a+b two layers › POZ domain › POZ domain › POZ domain › Skp1,Skp1_POZ | 0.72 | 51.0 | 4.19e-01 | 74.4% | 43.6% |
| 4106251 | 1037.1.1.1 ↗ | alpha bundles › Prolipoprotein diacylglyceryl transferase › Prolipoprotein diacylglyceryl transferase › Prolipoprotein diacylglyceryl transferase › LGT | 0.71 | 63.0 | 4.34e-01 | 100.0% | 62.5% |
| 3301471 | 5067.1.1.17 ↗ | alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › AtTam38 | 0.70 | 62.0 | 5.56e-01 | 100.0% | 74.5% |
| 3999750 | 109.4.1.27 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › W2 | 0.67 | 59.0 | 4.68e-01 | 100.0% | 78.6% |
| 3589591 | 601.32.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › FusB family N-terminal domain › FusB family N-terminal domain › EF-G-binding_N | 0.65 | 53.0 | 5.32e-01 | 89.7% | 86.3% |
| 3282241 | 191.1.1.1 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_1 | 0.62 | 50.0 | 4.15e-01 | 88.5% | 93.6% |
| 3612815 | 101.35.1.0 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX | 0.62 | 54.0 | 4.77e-01 | 100.0% | 65.8% |
| 4964270 | 3651.1.1.1 ↗ | alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › IF-2B | 0.62 | 52.0 | 4.81e-01 | 93.6% | 84.0% |
| 5043977 | 181.1.1.1 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N | 0.61 | 47.0 | 4.77e-01 | 83.3% | 92.0% |
| 5064398 | 101.1.10.3 ↗ | alpha arrays › HTH › HTH › Cyclin-like › TFIIB | 0.60 | 42.0 | 3.91e-01 | 80.8% | 57.0% |
| 4980601 | 5060.2.1.1 ↗ | alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF | 0.58 | 43.0 | 3.60e-01 | 82.1% | 60.0% |
| 5076381 | 101.1.10.3 ↗ | alpha arrays › HTH › HTH › Cyclin-like › TFIIB | 0.58 | 43.0 | 3.98e-01 | 79.5% | 93.0% |
| 4683234 | 3455.1.1.0 ↗ | alpha arrays › WY-domain in RXLR effectors › WY-domain in RXLR effectors › WY-domain in RXLR effectors | 0.57 | 43.0 | 4.13e-01 | 80.8% | 73.3% |
| 4988269 | 601.4.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains | 0.57 | 41.0 | 3.89e-01 | 75.6% | 87.4% |
| 5074875 | 181.1.1.1 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N | 0.57 | 49.0 | 4.77e-01 | 100.0% | 97.8% |
| 3954906 | 378.1.1.23 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › DUF222 | 0.56 | 47.0 | 3.85e-01 | 96.2% | 85.8% |
| 3963136 | 3317.1.1.0 ↗ | alpha arrays › KorB C-terminal domain-like › KorB C-terminal domain › KorB C-terminal domain | 0.56 | 48.0 | 4.06e-01 | 100.0% | 88.6% |
| 3641237 | 601.7.1.36 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › UFL1 | 0.55 | 48.0 | 3.93e-01 | 94.9% | 80.7% |
| 4206304 | 3455.1.1.5 ↗ | alpha arrays › WY-domain in RXLR effectors › WY-domain in RXLR effectors › WY-domain in RXLR effectors › PexRD54_WY | 0.55 | 41.0 | 4.00e-01 | 87.2% | 72.9% |
| 3314592 | 109.4.1.1292 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, PPR_3 | 0.55 | 48.0 | 3.07e-01 | 96.2% | 38.9% |
| 3426522 | 3562.1.1.11 ↗ | alpha bundles › Calcium release-activated calcium channel protein 1 › Calcium release-activated calcium channel protein 1 › Calcium release-activated calcium channel protein 1 › PGG | 0.55 | 38.0 | 3.22e-01 | 71.8% | 86.7% |
| 3398025 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.55 | 40.0 | 3.76e-01 | 79.5% | 93.0% |
| 4026528 | 568.1.1.0 ↗ | few secondary structure elements › p8-MTCP1-related › p8-MTCP1-related › p8-MTCP1-related | 0.54 | 44.0 | 4.04e-01 | 93.6% | 77.3% |
| 5044994 | 181.1.1.1 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N | 0.54 | 46.0 | 4.57e-01 | 100.0% | 100.0% |
| 169082 | 2006.1.1.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase | 0.54 | 39.0 | 2.86e-01 | 78.2% | 28.4% |
| 4683236 | 3455.1.1.0 ↗ | alpha arrays › WY-domain in RXLR effectors › WY-domain in RXLR effectors › WY-domain in RXLR effectors | 0.54 | 38.0 | 3.65e-01 | 76.9% | 66.3% |
| 3550165 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.53 | 45.0 | 4.29e-01 | 97.4% | 97.9% |
| 3635560 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.52 | 43.0 | 2.89e-01 | 100.0% | 84.1% |
| 5035414 | 181.1.1.1 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N | 0.52 | 46.0 | 4.44e-01 | 100.0% | 96.7% |
| 4388615 | 3455.1.1.5 ↗ | alpha arrays › WY-domain in RXLR effectors › WY-domain in RXLR effectors › WY-domain in RXLR effectors › PexRD54_WY | 0.51 | 41.0 | 3.95e-01 | 91.0% | 76.7% |
| 3532074 | 109.4.1.192 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8 | 0.51 | 43.0 | 3.40e-01 | 97.4% | 60.6% |
| 4588807 | 101.1.1.74 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › tRNA_bind_3 | 0.50 | 35.0 | 3.27e-01 | 83.3% | 57.0% |